Package | Description |
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org.biopax.paxtools.pattern.miner |
Package for pattern miner utility.
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Modifier and Type | Interface and Description |
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interface |
SIFMiner
This interface tells that the miner supports SIF output.
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Modifier and Type | Class and Description |
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class |
AbstractSIFMiner
Base class for SIF Miners.
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class |
CatalysisPrecedesMiner
Miner for the catalysis-precedes pattern.
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class |
ChemicalAffectsThroughBindingMiner
Miner for the chemical-affects-protein pattern.
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class |
ChemicalAffectsThroughControlMiner
Miner for the chemical-affects-protein pattern.
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class |
ConsumptionControlledByMiner
Miner for the consumption-controlled-by pattern.
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class |
ControlsDegradationIndirectMiner
Yet another miner for the controls-degradation pattern.
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class |
ControlsExpressionMiner
Miner for the transcriptional regulation pattern.
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class |
ControlsExpressionWithConvMiner
Miner for the transcriptional regulation pattern, modeled using Conversion.
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class |
ControlsPhosphorylationMiner
Miner for the controls-phosphorylation pattern.
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class |
ControlsProductionOfMiner
Miner for the controls-production-of pattern.
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class |
ControlsStateChangeDetailedMiner
Miner for the controls-state-change-detailed pattern.
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class |
ControlsStateChangeOfMiner
Miner for the controls-state-change pattern.
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class |
ControlsTransportMiner
Miner for the controls-transport pattern.
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class |
ControlsTransportOfChemicalMiner
Miner for the controls-transport-of-chemical pattern.
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class |
CSCOBothControllerAndParticipantMiner
Miner for the controls-state-change pattern.
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class |
CSCOButIsParticipantMiner
Miner for the controls-state-change pattern.
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class |
CSCOThroughBindingSmallMoleculeMiner
Miner for the controls-state-change pattern.
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class |
CSCOThroughControllingSmallMoleculeMiner
Miner for the controls-state-change pattern.
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class |
CSCOThroughDegradationMiner
Miner for the degradation pattern.
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class |
DirectedRelationMiner
Miner for the directed relations between proteins.
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class |
InComplexWithMiner
Miner for the degradation pattern.
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class |
InteractsWithMiner
Miner for the "interacts-with" relation.
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class |
MinerAdapter
Adapter class for a miner.
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class |
NeighborOfMiner
Miner for the "neighbor-of" relation.
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class |
ReactsWithMiner
Miner for the "reacts-with" relation.
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class |
RelatedGenesOfInteractionsMiner
Miner for the related genes (participant or controller) of interactions.
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class |
UbiquitousIDMiner
Miner for getting ubiquitous small molecules in a model.
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class |
UsedToProduceMiner
Miner for the "used-for-production-of" relation.
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Constructor and Description |
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Dialog(Miner... miners)
Constructor for the dialog.
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