public class CSCOThroughDegradationMiner extends AbstractSIFMiner
blacklist, description, idFetcher, idMap, name, pattern
Constructor and Description |
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CSCOThroughDegradationMiner()
Constructor that sets name and description.
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Modifier and Type | Method and Description |
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Pattern |
constructPattern()
Constructs the pattern.
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String[] |
getMediatorLabels()
If a SIF miner wants to tell which essential BioPAX elements mediated this relation, then
they need to override this method and pass the labels of elements.
|
String |
getSourceLabel()
Gets the label of the source node.
|
String[] |
getSourcePELabels()
If a SIF miner wants to tell which PhysicalEntity objects acted as source of the relation,
they need to override this method and pass the labels of elements.
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String |
getTargetLabel()
Gets the label of the target node.
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String[] |
getTargetPELabels()
If a SIF miner wants to tell which PhysicalEntity objects acted as source of the relation,
they need to override this method and pass the labels of elements.
|
getSIFType, setType, writeResult
concat, createSIFInteraction, fetchIDs, getCellularLocations, getChain, getCompoundName, getDeltaCompartments, getDeltaModifications, getDescription, getGeneSymbol, getGeneSymbol, getHeader, getIdentifiers, getIdMap, getModifications, getModifications, getModificationTerm, getName, getPattern, getPositionInString, getPositionStart, getRelationType, getUniprotNameForHuman, getUniprotNameForHuman, getValue, isInhibition, labeledInactive, removeCommon, setBlacklist, setDescription, setIDFetcher, setIdMap, setName, sign, sign, toString, toStringSet, writeResultAsSIF, writeResultDetailed, writeSIFsUsingSIFFramework
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
createSIFInteraction, setBlacklist, setIDFetcher
getDescription, getName, getPattern
public CSCOThroughDegradationMiner()
public Pattern constructPattern()
constructPattern
in class MinerAdapter
public String getSourceLabel()
SIFMiner
public String getTargetLabel()
SIFMiner
public String[] getMediatorLabels()
MinerAdapter
getMediatorLabels
in class MinerAdapter
public String[] getSourcePELabels()
MinerAdapter
getSourcePELabels
in class MinerAdapter
public String[] getTargetPELabels()
MinerAdapter
getTargetPELabels
in class MinerAdapter
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