public class ControlsExpressionWithConvMiner extends ControlsExpressionMiner
blacklist, description, idFetcher, idMap, name, pattern
Constructor and Description |
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ControlsExpressionWithConvMiner()
Constructor that sets name and description.
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Modifier and Type | Method and Description |
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Pattern |
constructPattern()
Constructs the pattern.
|
String[] |
getMediatorLabels()
If a SIF miner wants to tell which essential BioPAX elements mediated this relation, then
they need to override this method and pass the labels of elements.
|
String[] |
getSourcePELabels()
If a SIF miner wants to tell which PhysicalEntity objects acted as source of the relation,
they need to override this method and pass the labels of elements.
|
String[] |
getTargetPELabels()
If a SIF miner wants to tell which PhysicalEntity objects acted as source of the relation,
they need to override this method and pass the labels of elements.
|
getSourceLabel, getTargetLabel
getSIFType, setType, writeResult
concat, createSIFInteraction, fetchIDs, getCellularLocations, getChain, getCompoundName, getDeltaCompartments, getDeltaModifications, getDescription, getGeneSymbol, getGeneSymbol, getHeader, getIdentifiers, getIdMap, getModifications, getModifications, getModificationTerm, getName, getPattern, getPositionInString, getPositionStart, getRelationType, getUniprotNameForHuman, getUniprotNameForHuman, getValue, isInhibition, labeledInactive, removeCommon, setBlacklist, setDescription, setIDFetcher, setIdMap, setName, sign, sign, toString, toStringSet, writeResultAsSIF, writeResultDetailed, writeSIFsUsingSIFFramework
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
createSIFInteraction, setBlacklist, setIDFetcher
getDescription, getName, getPattern
public ControlsExpressionWithConvMiner()
public Pattern constructPattern()
constructPattern
in class ControlsExpressionMiner
public String[] getMediatorLabels()
MinerAdapter
getMediatorLabels
in class ControlsExpressionMiner
public String[] getSourcePELabels()
MinerAdapter
getSourcePELabels
in class ControlsExpressionMiner
public String[] getTargetPELabels()
MinerAdapter
getTargetPELabels
in class ControlsExpressionMiner
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