public interface SIFMiner extends Miner
Modifier and Type | Method and Description |
---|---|
Set<SIFInteraction> |
createSIFInteraction(Match m,
IDFetcher fetcher)
Creates SIF interactions for the given match.
|
SIFType |
getSIFType()
Gets the type of the interaction.
|
String |
getSourceLabel()
Gets the label of the source node.
|
String |
getTargetLabel()
Gets the label of the target node.
|
void |
setBlacklist(Blacklist blacklist)
Sets the blacklist that can be used during the search.
|
void |
setIDFetcher(IDFetcher idFetcher)
Sets the idFetcher that helps to fasten the search.
|
getDescription, getName, getPattern, writeResult
String getSourceLabel()
String getTargetLabel()
SIFType getSIFType()
Set<SIFInteraction> createSIFInteraction(Match m, IDFetcher fetcher)
m
- match to use for SIF creationfetcher
- ID generator from BioPAX objectvoid setBlacklist(Blacklist blacklist)
blacklist
- the blacklistvoid setIDFetcher(IDFetcher idFetcher)
idFetcher
- ID generator from BioPAX objectCopyright © 2015 BioPAX. All rights reserved.