Hierarchy For Package org.biopax.paxtools.model.level3

Package Hierarchies:

• All Packages

Interface Hierarchy

• java.lang.Cloneable
  • org.biopax.paxtools.model.BioPAXElement (also extends java.io.Serializable)
    • org.biopax.paxtools.model.level3.Level3Element
      • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
        • org.biopax.paxtools.model.level3.Controller
          • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
          • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
            • org.biopax.paxtools.model.level3.Complex
            • org.biopax.paxtools.model.level3.SimplePhysicalEntity
              • org.biopax.paxtools.model.level3.SequenceEntity
                • org.biopax.paxtools.model.level3.NucleicAcid
                  • org.biopax.paxtools.model.level3.Dna
                  • org.biopax.paxtools.model.level3.DnaRegion
                  • org.biopax.paxtools.model.level3.Rna
                  • org.biopax.paxtools.model.level3.RnaRegion
                • org.biopax.paxtools.model.level3.Protein
              • org.biopax.paxtools.model.level3.SmallMolecule
        • org.biopax.paxtools.model.level3.Gene
        • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
          • org.biopax.paxtools.model.level3.Complex
          • org.biopax.paxtools.model.level3.SimplePhysicalEntity
            • org.biopax.paxtools.model.level3.SequenceEntity
              • org.biopax.paxtools.model.level3.NucleicAcid
                • org.biopax.paxtools.model.level3.Dna
                • org.biopax.paxtools.model.level3.DnaRegion
                • org.biopax.paxtools.model.level3.Rna
                • org.biopax.paxtools.model.level3.RnaRegion
              • org.biopax.paxtools.model.level3.Protein
            • org.biopax.paxtools.model.level3.SmallMolecule
        • org.biopax.paxtools.model.level3.Process
          • org.biopax.paxtools.model.level3.Interaction
            • org.biopax.paxtools.model.level3.Control
              • org.biopax.paxtools.model.level3.Catalysis
              • org.biopax.paxtools.model.level3.Modulation
              • org.biopax.paxtools.model.level3.TemplateReactionRegulation
            • org.biopax.paxtools.model.level3.Conversion
              • org.biopax.paxtools.model.level3.BiochemicalReaction
                • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
              • org.biopax.paxtools.model.level3.ComplexAssembly
              • org.biopax.paxtools.model.level3.Degradation
              • org.biopax.paxtools.model.level3.Transport
                • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
            • org.biopax.paxtools.model.level3.GeneticInteraction
            • org.biopax.paxtools.model.level3.MolecularInteraction
            • org.biopax.paxtools.model.level3.TemplateReaction
          • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
      • org.biopax.paxtools.model.level3.Observable
        • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Named)
          • org.biopax.paxtools.model.level3.Controller
            • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
            • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
              • org.biopax.paxtools.model.level3.Complex
              • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                • org.biopax.paxtools.model.level3.SequenceEntity
                  • org.biopax.paxtools.model.level3.NucleicAcid
                    • org.biopax.paxtools.model.level3.Dna
                    • org.biopax.paxtools.model.level3.DnaRegion
                    • org.biopax.paxtools.model.level3.Rna
                    • org.biopax.paxtools.model.level3.RnaRegion
                  • org.biopax.paxtools.model.level3.Protein
                • org.biopax.paxtools.model.level3.SmallMolecule
          • org.biopax.paxtools.model.level3.Gene
          • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
            • org.biopax.paxtools.model.level3.Complex
            • org.biopax.paxtools.model.level3.SimplePhysicalEntity
              • org.biopax.paxtools.model.level3.SequenceEntity
                • org.biopax.paxtools.model.level3.NucleicAcid
                  • org.biopax.paxtools.model.level3.Dna
                  • org.biopax.paxtools.model.level3.DnaRegion
                  • org.biopax.paxtools.model.level3.Rna
                  • org.biopax.paxtools.model.level3.RnaRegion
                • org.biopax.paxtools.model.level3.Protein
              • org.biopax.paxtools.model.level3.SmallMolecule
          • org.biopax.paxtools.model.level3.Process
            • org.biopax.paxtools.model.level3.Interaction
              • org.biopax.paxtools.model.level3.Control
                • org.biopax.paxtools.model.level3.Catalysis
                • org.biopax.paxtools.model.level3.Modulation
                • org.biopax.paxtools.model.level3.TemplateReactionRegulation
              • org.biopax.paxtools.model.level3.Conversion
                • org.biopax.paxtools.model.level3.BiochemicalReaction
                  • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
                • org.biopax.paxtools.model.level3.ComplexAssembly
                • org.biopax.paxtools.model.level3.Degradation
                • org.biopax.paxtools.model.level3.Transport
                  • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
              • org.biopax.paxtools.model.level3.GeneticInteraction
              • org.biopax.paxtools.model.level3.MolecularInteraction
              • org.biopax.paxtools.model.level3.TemplateReaction
            • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
        • org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.BindingFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
          • org.biopax.paxtools.model.level3.FragmentFeature
          • org.biopax.paxtools.model.level3.ModificationFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
        • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.SequenceEntityReference
            • org.biopax.paxtools.model.level3.NucleicAcidReference
              • org.biopax.paxtools.model.level3.DnaReference
              • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                • org.biopax.paxtools.model.level3.DnaRegionReference
                • org.biopax.paxtools.model.level3.RnaRegionReference
              • org.biopax.paxtools.model.level3.RnaReference
            • org.biopax.paxtools.model.level3.ProteinReference
          • org.biopax.paxtools.model.level3.SmallMoleculeReference
        • org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.BiochemicalPathwayStep
      • org.biopax.paxtools.model.level3.UtilityClass
        • org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.Named)
        • org.biopax.paxtools.model.level3.ChemicalConstant
          • org.biopax.paxtools.model.level3.DeltaG
          • org.biopax.paxtools.model.level3.KPrime
        • org.biopax.paxtools.model.level3.ChemicalStructure
        • org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.XReferrable)
          • org.biopax.paxtools.model.level3.CellularLocationVocabulary
          • org.biopax.paxtools.model.level3.CellVocabulary
          • org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
          • org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
          • org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
          • org.biopax.paxtools.model.level3.InteractionVocabulary
          • org.biopax.paxtools.model.level3.PhenotypeVocabulary
          • org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
          • org.biopax.paxtools.model.level3.SequenceModificationVocabulary
          • org.biopax.paxtools.model.level3.SequenceRegionVocabulary
          • org.biopax.paxtools.model.level3.TissueVocabulary
        • org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.BindingFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
          • org.biopax.paxtools.model.level3.FragmentFeature
          • org.biopax.paxtools.model.level3.ModificationFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
        • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.SequenceEntityReference
            • org.biopax.paxtools.model.level3.NucleicAcidReference
              • org.biopax.paxtools.model.level3.DnaReference
              • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                • org.biopax.paxtools.model.level3.DnaRegionReference
                • org.biopax.paxtools.model.level3.RnaRegionReference
              • org.biopax.paxtools.model.level3.RnaReference
            • org.biopax.paxtools.model.level3.ProteinReference
          • org.biopax.paxtools.model.level3.SmallMoleculeReference
        • org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.ExperimentalForm
        • org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.BiochemicalPathwayStep
        • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.SequenceLocation
          • org.biopax.paxtools.model.level3.SequenceInterval
          • org.biopax.paxtools.model.level3.SequenceSite
        • org.biopax.paxtools.model.level3.Stoichiometry
        • org.biopax.paxtools.model.level3.Xref
          • org.biopax.paxtools.model.level3.PublicationXref
          • org.biopax.paxtools.model.level3.RelationshipXref
          • org.biopax.paxtools.model.level3.UnificationXref
      • org.biopax.paxtools.model.level3.XReferrable
        • org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.CellularLocationVocabulary
          • org.biopax.paxtools.model.level3.CellVocabulary
          • org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
          • org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
          • org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
          • org.biopax.paxtools.model.level3.InteractionVocabulary
          • org.biopax.paxtools.model.level3.PhenotypeVocabulary
          • org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
          • org.biopax.paxtools.model.level3.SequenceModificationVocabulary
          • org.biopax.paxtools.model.level3.SequenceRegionVocabulary
          • org.biopax.paxtools.model.level3.TissueVocabulary
        • org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.UtilityClass)
        • org.biopax.paxtools.model.level3.Named
          • org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Observable)
            • org.biopax.paxtools.model.level3.Controller
              • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
              • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
                • org.biopax.paxtools.model.level3.Complex
                • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                  • org.biopax.paxtools.model.level3.SequenceEntity
                    • org.biopax.paxtools.model.level3.NucleicAcid
                      • org.biopax.paxtools.model.level3.Dna
                      • org.biopax.paxtools.model.level3.DnaRegion
                      • org.biopax.paxtools.model.level3.Rna
                      • org.biopax.paxtools.model.level3.RnaRegion
                    • org.biopax.paxtools.model.level3.Protein
                  • org.biopax.paxtools.model.level3.SmallMolecule
            • org.biopax.paxtools.model.level3.Gene
            • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
              • org.biopax.paxtools.model.level3.Complex
              • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                • org.biopax.paxtools.model.level3.SequenceEntity
                  • org.biopax.paxtools.model.level3.NucleicAcid
                    • org.biopax.paxtools.model.level3.Dna
                    • org.biopax.paxtools.model.level3.DnaRegion
                    • org.biopax.paxtools.model.level3.Rna
                    • org.biopax.paxtools.model.level3.RnaRegion
                  • org.biopax.paxtools.model.level3.Protein
                • org.biopax.paxtools.model.level3.SmallMolecule
            • org.biopax.paxtools.model.level3.Process
              • org.biopax.paxtools.model.level3.Interaction
                • org.biopax.paxtools.model.level3.Control
                  • org.biopax.paxtools.model.level3.Catalysis
                  • org.biopax.paxtools.model.level3.Modulation
                  • org.biopax.paxtools.model.level3.TemplateReactionRegulation
                • org.biopax.paxtools.model.level3.Conversion
                  • org.biopax.paxtools.model.level3.BiochemicalReaction
                    • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
                  • org.biopax.paxtools.model.level3.ComplexAssembly
                  • org.biopax.paxtools.model.level3.Degradation
                  • org.biopax.paxtools.model.level3.Transport
                    • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
                • org.biopax.paxtools.model.level3.GeneticInteraction
                • org.biopax.paxtools.model.level3.MolecularInteraction
                • org.biopax.paxtools.model.level3.TemplateReaction
              • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
          • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Observable, org.biopax.paxtools.model.level3.UtilityClass)
            • org.biopax.paxtools.model.level3.SequenceEntityReference
              • org.biopax.paxtools.model.level3.NucleicAcidReference
                • org.biopax.paxtools.model.level3.DnaReference
                • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                  • org.biopax.paxtools.model.level3.DnaRegionReference
                  • org.biopax.paxtools.model.level3.RnaRegionReference
                • org.biopax.paxtools.model.level3.RnaReference
              • org.biopax.paxtools.model.level3.ProteinReference
            • org.biopax.paxtools.model.level3.SmallMoleculeReference
          • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.UtilityClass, org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
        • org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.UtilityClass)
• java.io.Serializable
  • org.biopax.paxtools.model.BioPAXElement (also extends java.lang.Cloneable)
    • org.biopax.paxtools.model.level3.Level3Element
      • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
        • org.biopax.paxtools.model.level3.Controller
          • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
          • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
            • org.biopax.paxtools.model.level3.Complex
            • org.biopax.paxtools.model.level3.SimplePhysicalEntity
              • org.biopax.paxtools.model.level3.SequenceEntity
                • org.biopax.paxtools.model.level3.NucleicAcid
                  • org.biopax.paxtools.model.level3.Dna
                  • org.biopax.paxtools.model.level3.DnaRegion
                  • org.biopax.paxtools.model.level3.Rna
                  • org.biopax.paxtools.model.level3.RnaRegion
                • org.biopax.paxtools.model.level3.Protein
              • org.biopax.paxtools.model.level3.SmallMolecule
        • org.biopax.paxtools.model.level3.Gene
        • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
          • org.biopax.paxtools.model.level3.Complex
          • org.biopax.paxtools.model.level3.SimplePhysicalEntity
            • org.biopax.paxtools.model.level3.SequenceEntity
              • org.biopax.paxtools.model.level3.NucleicAcid
                • org.biopax.paxtools.model.level3.Dna
                • org.biopax.paxtools.model.level3.DnaRegion
                • org.biopax.paxtools.model.level3.Rna
                • org.biopax.paxtools.model.level3.RnaRegion
              • org.biopax.paxtools.model.level3.Protein
            • org.biopax.paxtools.model.level3.SmallMolecule
        • org.biopax.paxtools.model.level3.Process
          • org.biopax.paxtools.model.level3.Interaction
            • org.biopax.paxtools.model.level3.Control
              • org.biopax.paxtools.model.level3.Catalysis
              • org.biopax.paxtools.model.level3.Modulation
              • org.biopax.paxtools.model.level3.TemplateReactionRegulation
            • org.biopax.paxtools.model.level3.Conversion
              • org.biopax.paxtools.model.level3.BiochemicalReaction
                • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
              • org.biopax.paxtools.model.level3.ComplexAssembly
              • org.biopax.paxtools.model.level3.Degradation
              • org.biopax.paxtools.model.level3.Transport
                • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
            • org.biopax.paxtools.model.level3.GeneticInteraction
            • org.biopax.paxtools.model.level3.MolecularInteraction
            • org.biopax.paxtools.model.level3.TemplateReaction
          • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
      • org.biopax.paxtools.model.level3.Observable
        • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Named)
          • org.biopax.paxtools.model.level3.Controller
            • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
            • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
              • org.biopax.paxtools.model.level3.Complex
              • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                • org.biopax.paxtools.model.level3.SequenceEntity
                  • org.biopax.paxtools.model.level3.NucleicAcid
                    • org.biopax.paxtools.model.level3.Dna
                    • org.biopax.paxtools.model.level3.DnaRegion
                    • org.biopax.paxtools.model.level3.Rna
                    • org.biopax.paxtools.model.level3.RnaRegion
                  • org.biopax.paxtools.model.level3.Protein
                • org.biopax.paxtools.model.level3.SmallMolecule
          • org.biopax.paxtools.model.level3.Gene
          • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
            • org.biopax.paxtools.model.level3.Complex
            • org.biopax.paxtools.model.level3.SimplePhysicalEntity
              • org.biopax.paxtools.model.level3.SequenceEntity
                • org.biopax.paxtools.model.level3.NucleicAcid
                  • org.biopax.paxtools.model.level3.Dna
                  • org.biopax.paxtools.model.level3.DnaRegion
                  • org.biopax.paxtools.model.level3.Rna
                  • org.biopax.paxtools.model.level3.RnaRegion
                • org.biopax.paxtools.model.level3.Protein
              • org.biopax.paxtools.model.level3.SmallMolecule
          • org.biopax.paxtools.model.level3.Process
            • org.biopax.paxtools.model.level3.Interaction
              • org.biopax.paxtools.model.level3.Control
                • org.biopax.paxtools.model.level3.Catalysis
                • org.biopax.paxtools.model.level3.Modulation
                • org.biopax.paxtools.model.level3.TemplateReactionRegulation
              • org.biopax.paxtools.model.level3.Conversion
                • org.biopax.paxtools.model.level3.BiochemicalReaction
                  • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
                • org.biopax.paxtools.model.level3.ComplexAssembly
                • org.biopax.paxtools.model.level3.Degradation
                • org.biopax.paxtools.model.level3.Transport
                  • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
              • org.biopax.paxtools.model.level3.GeneticInteraction
              • org.biopax.paxtools.model.level3.MolecularInteraction
              • org.biopax.paxtools.model.level3.TemplateReaction
            • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
        • org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.BindingFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
          • org.biopax.paxtools.model.level3.FragmentFeature
          • org.biopax.paxtools.model.level3.ModificationFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
        • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.SequenceEntityReference
            • org.biopax.paxtools.model.level3.NucleicAcidReference
              • org.biopax.paxtools.model.level3.DnaReference
              • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                • org.biopax.paxtools.model.level3.DnaRegionReference
                • org.biopax.paxtools.model.level3.RnaRegionReference
              • org.biopax.paxtools.model.level3.RnaReference
            • org.biopax.paxtools.model.level3.ProteinReference
          • org.biopax.paxtools.model.level3.SmallMoleculeReference
        • org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.BiochemicalPathwayStep
      • org.biopax.paxtools.model.level3.UtilityClass
        • org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.Named)
        • org.biopax.paxtools.model.level3.ChemicalConstant
          • org.biopax.paxtools.model.level3.DeltaG
          • org.biopax.paxtools.model.level3.KPrime
        • org.biopax.paxtools.model.level3.ChemicalStructure
        • org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.XReferrable)
          • org.biopax.paxtools.model.level3.CellularLocationVocabulary
          • org.biopax.paxtools.model.level3.CellVocabulary
          • org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
          • org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
          • org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
          • org.biopax.paxtools.model.level3.InteractionVocabulary
          • org.biopax.paxtools.model.level3.PhenotypeVocabulary
          • org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
          • org.biopax.paxtools.model.level3.SequenceModificationVocabulary
          • org.biopax.paxtools.model.level3.SequenceRegionVocabulary
          • org.biopax.paxtools.model.level3.TissueVocabulary
        • org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.BindingFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
          • org.biopax.paxtools.model.level3.FragmentFeature
          • org.biopax.paxtools.model.level3.ModificationFeature
            • org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
        • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.SequenceEntityReference
            • org.biopax.paxtools.model.level3.NucleicAcidReference
              • org.biopax.paxtools.model.level3.DnaReference
              • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                • org.biopax.paxtools.model.level3.DnaRegionReference
                • org.biopax.paxtools.model.level3.RnaRegionReference
              • org.biopax.paxtools.model.level3.RnaReference
            • org.biopax.paxtools.model.level3.ProteinReference
          • org.biopax.paxtools.model.level3.SmallMoleculeReference
        • org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.ExperimentalForm
        • org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.Observable)
          • org.biopax.paxtools.model.level3.BiochemicalPathwayStep
        • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.SequenceLocation
          • org.biopax.paxtools.model.level3.SequenceInterval
          • org.biopax.paxtools.model.level3.SequenceSite
        • org.biopax.paxtools.model.level3.Stoichiometry
        • org.biopax.paxtools.model.level3.Xref
          • org.biopax.paxtools.model.level3.PublicationXref
          • org.biopax.paxtools.model.level3.RelationshipXref
          • org.biopax.paxtools.model.level3.UnificationXref
      • org.biopax.paxtools.model.level3.XReferrable
        • org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.CellularLocationVocabulary
          • org.biopax.paxtools.model.level3.CellVocabulary
          • org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
          • org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
          • org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
          • org.biopax.paxtools.model.level3.InteractionVocabulary
          • org.biopax.paxtools.model.level3.PhenotypeVocabulary
          • org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
          • org.biopax.paxtools.model.level3.SequenceModificationVocabulary
          • org.biopax.paxtools.model.level3.SequenceRegionVocabulary
          • org.biopax.paxtools.model.level3.TissueVocabulary
        • org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.UtilityClass)
        • org.biopax.paxtools.model.level3.Named
          • org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.UtilityClass)
          • org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Observable)
            • org.biopax.paxtools.model.level3.Controller
              • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
              • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
                • org.biopax.paxtools.model.level3.Complex
                • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                  • org.biopax.paxtools.model.level3.SequenceEntity
                    • org.biopax.paxtools.model.level3.NucleicAcid
                      • org.biopax.paxtools.model.level3.Dna
                      • org.biopax.paxtools.model.level3.DnaRegion
                      • org.biopax.paxtools.model.level3.Rna
                      • org.biopax.paxtools.model.level3.RnaRegion
                    • org.biopax.paxtools.model.level3.Protein
                  • org.biopax.paxtools.model.level3.SmallMolecule
            • org.biopax.paxtools.model.level3.Gene
            • org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
              • org.biopax.paxtools.model.level3.Complex
              • org.biopax.paxtools.model.level3.SimplePhysicalEntity
                • org.biopax.paxtools.model.level3.SequenceEntity
                  • org.biopax.paxtools.model.level3.NucleicAcid
                    • org.biopax.paxtools.model.level3.Dna
                    • org.biopax.paxtools.model.level3.DnaRegion
                    • org.biopax.paxtools.model.level3.Rna
                    • org.biopax.paxtools.model.level3.RnaRegion
                  • org.biopax.paxtools.model.level3.Protein
                • org.biopax.paxtools.model.level3.SmallMolecule
            • org.biopax.paxtools.model.level3.Process
              • org.biopax.paxtools.model.level3.Interaction
                • org.biopax.paxtools.model.level3.Control
                  • org.biopax.paxtools.model.level3.Catalysis
                  • org.biopax.paxtools.model.level3.Modulation
                  • org.biopax.paxtools.model.level3.TemplateReactionRegulation
                • org.biopax.paxtools.model.level3.Conversion
                  • org.biopax.paxtools.model.level3.BiochemicalReaction
                    • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
                  • org.biopax.paxtools.model.level3.ComplexAssembly
                  • org.biopax.paxtools.model.level3.Degradation
                  • org.biopax.paxtools.model.level3.Transport
                    • org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
                • org.biopax.paxtools.model.level3.GeneticInteraction
                • org.biopax.paxtools.model.level3.MolecularInteraction
                • org.biopax.paxtools.model.level3.TemplateReaction
              • org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
          • org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Observable, org.biopax.paxtools.model.level3.UtilityClass)
            • org.biopax.paxtools.model.level3.SequenceEntityReference
              • org.biopax.paxtools.model.level3.NucleicAcidReference
                • org.biopax.paxtools.model.level3.DnaReference
                • org.biopax.paxtools.model.level3.NucleicAcidRegionReference
                  • org.biopax.paxtools.model.level3.DnaRegionReference
                  • org.biopax.paxtools.model.level3.RnaRegionReference
                • org.biopax.paxtools.model.level3.RnaReference
              • org.biopax.paxtools.model.level3.ProteinReference
            • org.biopax.paxtools.model.level3.SmallMoleculeReference
          • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.UtilityClass, org.biopax.paxtools.model.level3.XReferrable)
        • org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
        • org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.UtilityClass)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biopax.paxtools.model.level3.TemplateDirectionType
    • org.biopax.paxtools.model.level3.StructureFormatType
    • org.biopax.paxtools.model.level3.StepDirection
    • org.biopax.paxtools.model.level3.PositionStatusType
    • org.biopax.paxtools.model.level3.ConversionDirectionType
    • org.biopax.paxtools.model.level3.ControlType
    • org.biopax.paxtools.model.level3.CatalysisDirectionType