public interface Complex extends PhysicalEntity
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Modifier and Type | Method and Description |
---|---|
void |
addComponent(PhysicalEntity component)
Defines the PhysicalEntity subunits of this complex.
|
void |
addComponentStoichiometry(Stoichiometry stoichiometry)
The stoichiometry of components in a complex.
|
Set<PhysicalEntity> |
getComponent()
Defines the PhysicalEntity subunits of this complex.
|
Set<Stoichiometry> |
getComponentStoichiometry()
The stoichiometry of components in a complex.
|
Set<EntityReference> |
getMemberReferences()
Gets the
EntityReference s of the member simple physical entities. |
Set<SimplePhysicalEntity> |
getSimpleMembers()
Gets the member physical entities which are not complex.
|
void |
removeComponent(PhysicalEntity component)
Defines the PhysicalEntity subunits of this complex.
|
void |
removeComponentStoichiometry(Stoichiometry stoichiometry)
The stoichiometry of components in a complex.
|
addFeature, addMemberPhysicalEntity, addNotFeature, getCellularLocation, getComponentOf, getFeature, getMemberPhysicalEntity, getMemberPhysicalEntityOf, getModelInterface, getNotFeature, hasEquivalentCellularLocation, hasEquivalentFeatures, removeFeature, removeMemberPhysicalEntity, removeNotFeature, setCellularLocation
getControllerOf
addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource
addEvidence, getEvidence, removeEvidence
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getRDFId, isEquivalent
Set<PhysicalEntity> getComponent()
void addComponent(PhysicalEntity component)
component
- to be added as a new membervoid removeComponent(PhysicalEntity component)
component
- to be removed from members.Set<Stoichiometry> getComponentStoichiometry()
void addComponentStoichiometry(Stoichiometry stoichiometry)
stoichiometry
- add a stoichiometry for the member.void removeComponentStoichiometry(Stoichiometry stoichiometry)
stoichiometry
- remove a stoichiometry for the member.Set<SimplePhysicalEntity> getSimpleMembers()
Set<EntityReference> getMemberReferences()
EntityReference
s of the member simple physical entities. When the complex is nested,
contents of the member complexes are retrieved recursively.Copyright © 2015 BioPAX. All rights reserved.