public interface EntityReference extends UtilityClass, Named, Observable
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Modifier and Type | Method and Description |
---|---|
void |
addEntityFeature(EntityFeature feature)
Variable features that are observed for the entities of this entityReference - such as known PTM
or methylation sites and non-covalent bonds.
|
void |
addEntityReferenceType(EntityReferenceTypeVocabulary type)
Adds the given cv to the list of types
|
void |
addMemberEntityReference(EntityReference entityReference)
Adds the given entityReference to the member list
|
Set<EntityFeature> |
getEntityFeature()
Variable features that are observed for the entities of this entityReference - such as known PTM
or methylation sites and non-covalent bonds.
|
Set<SimplePhysicalEntity> |
getEntityReferenceOf()
Inverse of
SimplePhysicalEntity.getEntityReference() |
Set<EntityReferenceTypeVocabulary> |
getEntityReferenceType() |
Set<EntityReference> |
getMemberEntityReference() |
Set<EntityReference> |
getMemberEntityReferenceOf()
Reverse of
getMemberEntityReference() |
void |
removeEntityFeature(EntityFeature feature)
Variable features that are observed for the entities of this entityReference - such as known PTM
or methylation sites and non-covalent bonds.
|
void |
removeEntityReferenceType(EntityReferenceTypeVocabulary type)
Removes the given cv from the list of types
|
void |
removeMemberEntityReference(EntityReference entityReference)
Removes the given entityReference from the member list
|
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent
addEvidence, getEvidence, removeEvidence
Set<EntityFeature> getEntityFeature()
void addEntityFeature(EntityFeature feature)
feature
- to be added.void removeEntityFeature(EntityFeature feature)
feature
- to be removed.Set<SimplePhysicalEntity> getEntityReferenceOf()
SimplePhysicalEntity.getEntityReference()
SimplePhysicalEntity
that has this EntityReferenceSet<EntityReferenceTypeVocabulary> getEntityReferenceType()
void addEntityReferenceType(EntityReferenceTypeVocabulary type)
type
- A controlled vocabulary term that is used to describe the type of grouping such as
homology or functional group.void removeEntityReferenceType(EntityReferenceTypeVocabulary type)
type
- A controlled vocabulary term that is used to describe the type of grouping such as
homology or functional group.Set<EntityReference> getMemberEntityReference()
void addMemberEntityReference(EntityReference entityReference)
entityReference
- An entity reference that qualifies for the definition of this group. For
example a member of a PFAM protein family.void removeMemberEntityReference(EntityReference entityReference)
entityReference
- An entity reference that qualifies for the definition of this group. For
example a member of a PFAM protein family.Set<EntityReference> getMemberEntityReferenceOf()
getMemberEntityReference()
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