public interface PhysicalEntity extends Entity, Controller
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Modifier and Type | Method and Description |
---|---|
void |
addFeature(EntityFeature feature) |
void |
addMemberPhysicalEntity(PhysicalEntity memberPhysicalEntity) |
void |
addNotFeature(EntityFeature feature) |
CellularLocationVocabulary |
getCellularLocation()
A cellular location, e.g.
|
Set<Complex> |
getComponentOf() |
Set<EntityFeature> |
getFeature() |
Set<PhysicalEntity> |
getMemberPhysicalEntity()
Please avoid using this property in your BioPAX L3 models
unless absolutely sure/required, for there is an alternative way
(using PhysicalEntity/entityReference/memberEntityReference), and
this will probably be deprecated in the future BioPAX releases.
|
Set<PhysicalEntity> |
getMemberPhysicalEntityOf() |
Class<? extends PhysicalEntity> |
getModelInterface()
Overridden to provide better downcasting
|
Set<EntityFeature> |
getNotFeature() |
boolean |
hasEquivalentCellularLocation(PhysicalEntity that) |
boolean |
hasEquivalentFeatures(PhysicalEntity that) |
void |
removeFeature(EntityFeature feature) |
void |
removeMemberPhysicalEntity(PhysicalEntity memberPhysicalEntity) |
void |
removeNotFeature(EntityFeature feature) |
void |
setCellularLocation(CellularLocationVocabulary newCellularLocation)
A cellular location, e.g.
|
getControllerOf
addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource
addEvidence, getEvidence, removeEvidence
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getRDFId, isEquivalent
Set<Complex> getComponentOf()
CellularLocationVocabulary getCellularLocation()
void setCellularLocation(CellularLocationVocabulary newCellularLocation)
newCellularLocation
- for this physical entityboolean hasEquivalentFeatures(PhysicalEntity that)
boolean hasEquivalentCellularLocation(PhysicalEntity that)
Set<EntityFeature> getFeature()
void addFeature(EntityFeature feature)
void removeFeature(EntityFeature feature)
Set<EntityFeature> getNotFeature()
void addNotFeature(EntityFeature feature)
void removeNotFeature(EntityFeature feature)
Set<PhysicalEntity> getMemberPhysicalEntity()
void addMemberPhysicalEntity(PhysicalEntity memberPhysicalEntity)
void removeMemberPhysicalEntity(PhysicalEntity memberPhysicalEntity)
Set<PhysicalEntity> getMemberPhysicalEntityOf()
Class<? extends PhysicalEntity> getModelInterface()
getModelInterface
in interface BioPAXElement
org.biopax.paxtools.model
package
corresponding to a BioPAX class.Copyright © 2015 BioPAX. All rights reserved.