public class Group extends EntityReferenceImpl
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Modifier and Type | Method and Description |
---|---|
void |
addMember(EntityReference member) |
void |
addSubgroup(Group subgroup) |
boolean |
equals(Object o)
true if and only if the other obj has the same biopax type
(same
BioPAXElement.getModelInterface() , not a subclass) and
same URI. |
int |
equivalenceCode()
If two elements are equivalent, then their equivalence code should be the
same.
|
Set<EntityReference> |
getAllSimpleMembers() |
Map<String,Object> |
getAnnotations()
A general-purpose map to optionally
store additional application-specific information
about the BioPAX element, such as statistics,
inferred fields, etc.
|
String |
getRDFId()
This method returns the full URI of the element
(despite it is called RDFId).
|
String |
groupTypeToString() |
int |
hashCode()
This method is consistent with the
overridden
BioPAXElementImpl.equals(Object) method
(biopax type and URI are what matters) |
boolean |
isComplex() |
boolean |
isEmpty() |
boolean |
isEquivalent(BioPAXElement element)
This method compares the given element for equivalency.
|
String |
toString() |
addEntityFeature, addEntityReferenceType, addEvidence, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getEvidence, getMemberEntityReference, getMemberEntityReferenceOf, getModelInterface, removeEntityFeature, removeEntityReferenceType, removeEvidence, removeMemberEntityReference, setEntityFeature, setEntityReferenceOf, setEntityReferenceType, setEvidence, setMemberEntity, setMemberEntityReference, setMemberEntityReferenceOf
addName, getDisplayName, getDisplayNameX, getName, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setStandardName, setStandardNameX
addXref, getXref, removeXref, setXref
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
getPk, semanticallyEquivalent
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
public String getRDFId()
BioPAXElement
getRDFId
in interface BioPAXElement
getRDFId
in class BioPAXElementImpl
public boolean isEquivalent(BioPAXElement element)
BioPAXElement
isEquivalent
in interface BioPAXElement
isEquivalent
in class BioPAXElementImpl
element
- to be compared for equivalencypublic int equivalenceCode()
BioPAXElement
equivalenceCode
in interface BioPAXElement
equivalenceCode
in class XReferrableImpl
public void addMember(EntityReference member)
public void addSubgroup(Group subgroup)
public boolean isComplex()
public boolean equals(Object o)
BioPAXElementImpl
BioPAXElement.getModelInterface()
, not a subclass) and
same URI. Other properties are not considered.equals
in class BioPAXElementImpl
public int hashCode()
BioPAXElementImpl
BioPAXElementImpl.equals(Object)
method
(biopax type and URI are what matters)hashCode
in class BioPAXElementImpl
public boolean isEmpty()
public String toString()
toString
in class BioPAXElementImpl
public Map<String,Object> getAnnotations()
BioPAXElement
getAnnotations
in interface BioPAXElement
getAnnotations
in class BioPAXElementImpl
public String groupTypeToString()
public Set<EntityReference> getAllSimpleMembers()
Copyright © 2015 BioPAX. All rights reserved.