@Entity public abstract class NucleicAcidRegionReferenceImpl extends NucleicAcidReferenceImpl implements NucleicAcidRegionReference
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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NucleicAcidRegionReferenceImpl() |
Modifier and Type | Method and Description |
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void |
addRegionType(SequenceRegionVocabulary regionType) |
SequenceLocation |
getAbsoluteRegion() |
Set<SequenceRegionVocabulary> |
getRegionType() |
Set<NucleicAcidReference> |
getSubRegionOf() |
void |
removeRegionType(SequenceRegionVocabulary regionType) |
void |
setAbsoluteRegion(SequenceLocation absoluteRegion) |
protected void |
setRegionType(Set<SequenceRegionVocabulary> regionType) |
protected void |
setSubRegionOf(Set<NucleicAcidReference> subRegionOf) |
addSubRegion, getSubRegion, removeSubRegion, setSubRegion
equivalenceCode, getOrganism, getSequence, semanticallyEquivalent, setOrganism, setSequence
addEntityFeature, addEntityReferenceType, addEvidence, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getEvidence, getMemberEntityReference, getMemberEntityReferenceOf, getModelInterface, removeEntityFeature, removeEntityReferenceType, removeEvidence, removeMemberEntityReference, setEntityFeature, setEntityReferenceOf, setEntityReferenceType, setEvidence, setMemberEntity, setMemberEntityReference, setMemberEntityReferenceOf
addName, getDisplayName, getDisplayNameX, getName, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setStandardName, setStandardNameX
addXref, getXref, removeXref, setXref
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, toString
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addSubRegion, getSubRegion, removeSubRegion
getOrganism, getSequence, setOrganism, setSequence
addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent
addEvidence, getEvidence, removeEvidence
public NucleicAcidRegionReferenceImpl()
public Set<NucleicAcidReference> getSubRegionOf()
getSubRegionOf
in interface NucleicAcidRegionReference
protected void setSubRegionOf(Set<NucleicAcidReference> subRegionOf)
public SequenceLocation getAbsoluteRegion()
getAbsoluteRegion
in interface NucleicAcidRegionReference
public void setAbsoluteRegion(SequenceLocation absoluteRegion)
setAbsoluteRegion
in interface NucleicAcidRegionReference
public Set<SequenceRegionVocabulary> getRegionType()
getRegionType
in interface NucleicAcidRegionReference
public void addRegionType(SequenceRegionVocabulary regionType)
addRegionType
in interface NucleicAcidRegionReference
public void removeRegionType(SequenceRegionVocabulary regionType)
removeRegionType
in interface NucleicAcidRegionReference
protected void setRegionType(Set<SequenceRegionVocabulary> regionType)
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