Package | Description |
---|---|
org.biopax.paxtools.io.sif.level3 |
This package contains the SIF rules for BioPAX Level 3.
|
Modifier and Type | Class and Description |
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class |
ComponentRule
This rule class mines complex membership relations.
|
class |
ConsecutiveCatalysisRule
This class creates an interaction between two entities if they are catalyzing consecutive
conversions.
|
class |
ControlRule
A controls a conversion which B is at left or right or both.
|
class |
ControlsTogetherRule
Implements Co-Control rule, which means A and B have a control over the same interaction.
|
class |
ExpressionRule
This rule mines the transctivation and transinhibition relations between entities.
|
class |
ParticipatesRule
Finds pairs of molecules that are participants of the same interaction for the INTERACTS_WITH
type, and participants of the same Conversion for the REACTS_WITH type.
|
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