public class ComponentRule extends InteractionRuleL3Adaptor
Constructor and Description |
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ComponentRule() |
Modifier and Type | Method and Description |
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List<BinaryInteractionType> |
getRuleTypes()
Gets supported interaction types.
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void |
inferInteractionsFromPE(InteractionSetL3 interactionSet,
PhysicalEntity pe,
Model model)
Infer interactions where A = the given PhysicalEntity.
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void |
initOptionsNotNull(Map options)
Initializes options.
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checkOption, collectEntities, createAndAdd, createClique, inferInteractions, initOptions
public ComponentRule()
public void inferInteractionsFromPE(InteractionSetL3 interactionSet, PhysicalEntity pe, Model model)
interactionSet
- to be populatedpe
- PhysicalEntity that will be the seed of the inferencemodel
- BioPAX modelpublic void initOptionsNotNull(Map options)
initOptionsNotNull
in class InteractionRuleL3Adaptor
options
- options mappublic List<BinaryInteractionType> getRuleTypes()
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