public class ExpressionRule extends InteractionRuleL3Adaptor
Constructor and Description |
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ExpressionRule() |
Modifier and Type | Method and Description |
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List<BinaryInteractionType> |
getRuleTypes()
Gets a list of the rule types that this class implements.
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void |
inferInteractionsFromPE(InteractionSetL3 interactionSet,
PhysicalEntity pe,
Model model)
Searches the transcriptional relations using the pattern, then decides the interaction type
according to the type of the Control.
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checkOption, collectEntities, createAndAdd, createClique, inferInteractions, initOptions, initOptionsNotNull
public ExpressionRule()
public void inferInteractionsFromPE(InteractionSetL3 interactionSet, PhysicalEntity pe, Model model)
interactionSet
- to be populatedpe
- PhysicalEntity that will be the seed of the inferencemodel
- BioPAX modelpublic List<BinaryInteractionType> getRuleTypes()
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