public class ControlRule extends InteractionRuleL3Adaptor
Constructor and Description |
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ControlRule() |
Modifier and Type | Method and Description |
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List<BinaryInteractionType> |
getRuleTypes()
Gets supported interaction types.
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void |
inferInteractionsFromPE(InteractionSetL3 is3,
PhysicalEntity pe,
Model model)
When options map is null, then all rules are generated.
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void |
initOptionsNotNull(Map options)
Initializes options.
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checkOption, collectEntities, createAndAdd, createClique, inferInteractions, initOptions
public ControlRule()
public void initOptionsNotNull(Map options)
initOptionsNotNull
in class InteractionRuleL3Adaptor
options
- options mappublic void inferInteractionsFromPE(InteractionSetL3 is3, PhysicalEntity pe, Model model)
is3
- set to fill inmodel
- biopax graph - may be null, has no use herepe
- PhysicalEntity that will be the seed of the inferencepublic List<BinaryInteractionType> getRuleTypes()
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