public class ConsecutiveCatalysisRule extends InteractionRuleL3Adaptor
Constructor and Description |
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ConsecutiveCatalysisRule() |
Modifier and Type | Method and Description |
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List<BinaryInteractionType> |
getRuleTypes()
Gets supported interaction types.
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void |
inferInteractionsFromPE(InteractionSetL3 interactionSet,
PhysicalEntity pe,
Model model)
Infers interactions using the given PhysicalEntity as seed.
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checkOption, collectEntities, createAndAdd, createClique, inferInteractions, initOptions, initOptionsNotNull
public ConsecutiveCatalysisRule()
public void inferInteractionsFromPE(InteractionSetL3 interactionSet, PhysicalEntity pe, Model model)
interactionSet
- to be populatedpe
- PhysicalEntity that will be the seed of the inferencemodel
- BioPAX modelpublic List<BinaryInteractionType> getRuleTypes()
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