Package | Description |
---|---|
org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
|
org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
|
Modifier and Type | Class and Description |
---|---|
class |
BiochemicalPathwayStepImpl |
class |
PathwayStepImpl |
Modifier and Type | Method and Description |
---|---|
Class<? extends PathwayStep> |
PathwayStepImpl.getModelInterface() |
Set<PathwayStep> |
PathwayStepImpl.getNextStep() |
Set<PathwayStep> |
PathwayStepImpl.getNextStepOf() |
Set<PathwayStep> |
PathwayImpl.getPathwayOrder() |
Set<PathwayStep> |
ProcessImpl.getStepProcessOf() |
Modifier and Type | Method and Description |
---|---|
void |
PathwayStepImpl.addNextStep(PathwayStep nextStep) |
void |
PathwayImpl.addPathwayOrder(PathwayStep pathwayOrder) |
void |
PathwayStepImpl.removeNextStep(PathwayStep nextStep) |
void |
PathwayImpl.removePathwayOrder(PathwayStep pathwayOrder) |
Modifier and Type | Method and Description |
---|---|
protected void |
PathwayStepImpl.setNextStep(Set<PathwayStep> nextStep) |
protected void |
PathwayStepImpl.setNextStepOf(Set<PathwayStep> nextStepOf) |
protected void |
PathwayImpl.setPathwayOrder(Set<PathwayStep> pathwayOrder) |
protected void |
ProcessImpl.setStepProcessOf(Set<PathwayStep> stepProcessOf) |
Modifier and Type | Interface and Description |
---|---|
interface |
BiochemicalPathwayStep
Definition: Imposes ordering on a step in a biochemical pathway.
|
Modifier and Type | Method and Description |
---|---|
Set<PathwayStep> |
PathwayStep.getNextStep() |
Set<PathwayStep> |
PathwayStep.getNextStepOf() |
Set<PathwayStep> |
Pathway.getPathwayOrder() |
Set<PathwayStep> |
Process.getStepProcessOf() |
Modifier and Type | Method and Description |
---|---|
void |
PathwayStep.addNextStep(PathwayStep newNEXT_STEP) |
void |
Pathway.addPathwayOrder(PathwayStep order) |
void |
PathwayStep.removeNextStep(PathwayStep oldNEXT_STEP) |
void |
Pathway.removePathwayOrder(PathwayStep order) |
Copyright © 2015 BioPAX. All rights reserved.