@Entity @Indexed @Boost(value=1.7000000476837158f) public class PathwayImpl extends ProcessImpl implements Pathway
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
Constructor and Description |
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PathwayImpl() |
Modifier and Type | Method and Description |
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void |
addPathwayComponent(Process component) |
void |
addPathwayOrder(PathwayStep pathwayOrder) |
Set<Control> |
getControllerOf()
This method returns the list of
Control interactions that this entity controls. |
Class<? extends Pathway> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
BioSource |
getOrganism()
An organism, e.g.
|
Set<Process> |
getPathwayComponent() |
Set<PathwayStep> |
getPathwayOrder() |
void |
removePathwayComponent(Process component) |
void |
removePathwayOrder(PathwayStep pathwayOrder) |
protected void |
setControllerOf(Set<Control> controllerOf) |
void |
setOrganism(BioSource organism)
An organism, e.g.
|
protected void |
setPathwayComponent(Set<Process> pathwayComponent) |
protected void |
setPathwayOrder(Set<PathwayStep> pathwayOrder) |
getControlledOf, getPathwayComponentOf, getStepProcessOf, setControlledOf, setPathwayComponentOf, setStepProcessOf
addAvailability, addDataSource, addEvidence, getAvailability, getDataSource, getEvidence, getParticipantOf, removeAvailability, removeDataSource, removeEvidence, semanticallyEquivalent, setAvailability, setDataSource, setEvidence, setParticipantOf
addName, getDisplayName, getDisplayNameX, getName, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setStandardName, setStandardNameX
addXref, equivalenceCode, getXref, removeXref, setXref
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, toString
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
getControlledOf, getPathwayComponentOf, getStepProcessOf
addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource
addEvidence, getEvidence, removeEvidence
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
public PathwayImpl()
public Class<? extends Pathway> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
org.biopax.paxtools.model
package
corresponding to a BioPAX class.public Set<Process> getPathwayComponent()
getPathwayComponent
in interface Pathway
protected void setPathwayComponent(Set<Process> pathwayComponent)
public void addPathwayComponent(Process component)
addPathwayComponent
in interface Pathway
public void removePathwayComponent(Process component)
removePathwayComponent
in interface Pathway
public Set<PathwayStep> getPathwayOrder()
getPathwayOrder
in interface Pathway
protected void setPathwayOrder(Set<PathwayStep> pathwayOrder)
public void addPathwayOrder(PathwayStep pathwayOrder)
addPathwayOrder
in interface Pathway
public void removePathwayOrder(PathwayStep pathwayOrder)
removePathwayOrder
in interface Pathway
public BioSource getOrganism()
Pathway
getOrganism
in interface Pathway
public void setOrganism(BioSource organism)
Pathway
setOrganism
in interface Pathway
organism
- new organism for this genepublic Set<Control> getControllerOf()
Controller
Control
interactions that this entity controls. Reverse method of
Control.getController()
. Contents of this set is automatically maintained and should not be modified.getControllerOf
in interface Controller
Control
interactions that this entity controls.protected void setControllerOf(Set<Control> controllerOf)
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