@Entity @Indexed public class BiochemicalPathwayStepImpl extends PathwayStepImpl implements BiochemicalPathwayStep
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
---|
BiochemicalPathwayStepImpl() |
Modifier and Type | Method and Description |
---|---|
void |
addStepProcess(Process process) |
Class<? extends BiochemicalPathwayStep> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
Conversion |
getStepConversion()
This method returns the central conversion of this BiochemicalPathwayStep.
|
StepDirection |
getStepDirection()
This property can be used for annotating direction of enzymatic activity.
|
Set<Process> |
getStepProcess() |
void |
setStepConversion(Conversion highLander)
This method sets the conversion of this BiochemicalPathwayStep to the
new Step_Conversion.
|
void |
setStepDirection(StepDirection newSTEP_DIRECTION)
This property can be used for annotating direction of enzymatic activity.
|
addEvidence, addNextStep, getEvidence, getNextStep, getNextStepOf, getPathwayOrderOf, removeEvidence, removeNextStep, removeStepProcess, setEvidence, setNextStep, setNextStepOf, setPathwayOrderOf
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, equivalenceCode, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, semanticallyEquivalent, toString
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addNextStep, getNextStep, getNextStepOf, getPathwayOrderOf, removeNextStep, removeStepProcess
addEvidence, getEvidence, removeEvidence
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getRDFId, isEquivalent
public BiochemicalPathwayStepImpl()
public Class<? extends BiochemicalPathwayStep> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class PathwayStepImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.public Conversion getStepConversion()
BiochemicalPathwayStep
getStepConversion
in interface BiochemicalPathwayStep
public void setStepConversion(Conversion highLander)
setStepConversion
in interface BiochemicalPathwayStep
highLander
- the Conversion interaction of this biological pathway steppublic void addStepProcess(Process process)
addStepProcess
in interface PathwayStep
addStepProcess
in class PathwayStepImpl
public StepDirection getStepDirection()
BiochemicalPathwayStep
getStepDirection
in interface BiochemicalPathwayStep
public void setStepDirection(StepDirection newSTEP_DIRECTION)
BiochemicalPathwayStep
setStepDirection
in interface BiochemicalPathwayStep
newSTEP_DIRECTION
- Direction of the conversion in this particular pathway context.public Set<Process> getStepProcess()
getStepProcess
in interface PathwayStep
getStepProcess
in class PathwayStepImpl
Copyright © 2015 BioPAX. All rights reserved.