Package | Description |
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org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
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org.biopax.paxtools.io.sif.level3 |
This package contains the SIF rules for BioPAX Level 3.
|
org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
|
Modifier and Type | Class and Description |
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class |
BindingFeatureImpl |
class |
CovalentBindingFeatureImpl |
Modifier and Type | Method and Description |
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BindingFeature |
BindingFeatureImpl.getBindsTo() |
Modifier and Type | Method and Description |
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Class<? extends BindingFeature> |
BindingFeatureImpl.getModelInterface() |
Modifier and Type | Method and Description |
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void |
BindingFeatureImpl.setBindsTo(BindingFeature bindsTo)
This method will set the paired binding feature that binds to this feature.
|
Modifier and Type | Field and Description |
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static BindingFeature |
ChangeType.BINDING
Special static entity feature used as a 'hack' to capture complex membership.
|
Modifier and Type | Interface and Description |
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interface |
CovalentBindingFeature
Definition: An entity feature that represent the covalently bound state of a physical entity.
|
Modifier and Type | Method and Description |
---|---|
BindingFeature |
BindingFeature.getBindsTo()
A binding feature represents a "half" of the bond between two entities.
|
Modifier and Type | Method and Description |
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void |
BindingFeature.setBindsTo(BindingFeature bindsTo)
A binding feature represents a "half" of the bond between two entities.
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