@Entity @Indexed public class CovalentBindingFeatureImpl extends BindingFeatureImpl implements CovalentBindingFeature
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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CovalentBindingFeatureImpl() |
Modifier and Type | Method and Description |
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int |
equivalenceCode()
If two elements are equivalent, then their equivalence code should be the
same.
|
Class<? extends CovalentBindingFeature> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
SequenceModificationVocabulary |
getModificationType() |
protected boolean |
semanticallyEquivalent(BioPAXElement element) |
void |
setModificationType(SequenceModificationVocabulary modificationType) |
getBindsTo, getIntraMolecular, setBindsTo, setIntraMolecular
addEvidence, addMemberFeature, atEquivalentLocation, getEntityFeatureOf, getEvidence, getFeatureLocation, getFeatureLocationType, getFeatureOf, getMemberFeature, getMemberFeatureOf, getNotFeatureOf, locationCode, removeEvidence, removeMemberFeature, setEntityFeatureOf, setEvidence, setFeatureLocation, setFeatureLocationType, setFeatureOf, setMemberFeature, setMemberFeatureOf, setNotFeatureOf
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, toString
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
getBindsTo, getIntraMolecular, setBindsTo, setIntraMolecular
addMemberFeature, atEquivalentLocation, getEntityFeatureOf, getFeatureLocation, getFeatureLocationType, getFeatureOf, getMemberFeature, getMemberFeatureOf, getNotFeatureOf, removeMemberFeature, setFeatureLocation, setFeatureLocationType
addEvidence, getEvidence, removeEvidence
addComment, getComment, removeComment
getAnnotations, getRDFId, isEquivalent
public CovalentBindingFeatureImpl()
public Class<? extends CovalentBindingFeature> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class BindingFeatureImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.public SequenceModificationVocabulary getModificationType()
getModificationType
in interface ModificationFeature
public void setModificationType(SequenceModificationVocabulary modificationType)
setModificationType
in interface ModificationFeature
modificationType
- Description and classification of the feature.protected boolean semanticallyEquivalent(BioPAXElement element)
semanticallyEquivalent
in class BindingFeatureImpl
public int equivalenceCode()
BioPAXElement
equivalenceCode
in interface BioPAXElement
equivalenceCode
in class BindingFeatureImpl
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