public class TemplateReactionWrapper extends EventWrapper
banned, downstream, downstreamInited, graph, lowerEquivalent, pathSign, upperEquivalent, upstream, upstreamInited
Modifier | Constructor and Description |
---|---|
protected |
TemplateReactionWrapper(TemplateReaction tempReac,
GraphL3 graph)
Constructor with the TemplateReaction and the owner graph.
|
Modifier and Type | Method and Description |
---|---|
protected void |
addToDownstream(PhysicalEntity pe,
Graph graph)
Binds the given PhysicalEntity to the downstream.
|
protected void |
addToUpstream(BioPAXElement ele,
Graph graph)
Binds the given element to the upstream.
|
String |
getKey()
Uses RDF ID of TemplateReaction as key.
|
TemplateReaction |
getTempReac()
Gets the wrapped TemplateReaction
|
void |
initDownstream()
Binds to products.
|
void |
initUpstream()
Binds to template and controllers.
|
boolean |
isTranscription()
This is transcription.
|
getLowerEquivalent, getSign, getUpperEquivalent, isBreadthNode, isUbique
clear, getBanned, getDownstream, getDownstreamNoInit, getGraph, getPathSign, getUpstream, getUpstreamNoInit, init, initBanned, setBanned, setPathSign
protected TemplateReactionWrapper(TemplateReaction tempReac, GraphL3 graph)
tempReac
- TemplateReaction to wrapgraph
- Owner graphpublic void initUpstream()
initUpstream
in class AbstractNode
public void initDownstream()
initDownstream
in class AbstractNode
public boolean isTranscription()
isTranscription
in interface Node
isTranscription
in class EventWrapper
protected void addToDownstream(PhysicalEntity pe, Graph graph)
addToDownstream
in class EventWrapper
pe
- PhysicalEntity to bindgraph
- Owner graphprotected void addToUpstream(BioPAXElement ele, Graph graph)
addToUpstream
in class EventWrapper
ele
- Element to bindgraph
- Owner graphpublic String getKey()
public TemplateReaction getTempReac()
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