public abstract class EventWrapper extends AbstractNode
banned, downstream, downstreamInited, graph, lowerEquivalent, pathSign, upperEquivalent, upstream, upstreamInited
Modifier | Constructor and Description |
---|---|
protected |
EventWrapper(GraphL3 graph)
Constructor with the owner graph.
|
Modifier and Type | Method and Description |
---|---|
protected void |
addToDownstream(PhysicalEntity pe,
Graph graph)
Bind the wrapper of the given PhysicalEntity to the downstream.
|
protected void |
addToUpstream(BioPAXElement ele,
Graph graph)
Bind the wrapper of the given element to the upstream.
|
Collection<Node> |
getLowerEquivalent()
Events do not have equivalent objects.
|
int |
getSign()
Events have a positive sign.
|
Collection<Node> |
getUpperEquivalent()
Events do not have equivalent objects.
|
boolean |
isBreadthNode()
Events are not breadth nodes.
|
abstract boolean |
isTranscription()
Say if the event is a transcription.
|
boolean |
isUbique()
Events are not ubiquitous molecules.
|
clear, getBanned, getDownstream, getDownstreamNoInit, getGraph, getPathSign, getUpstream, getUpstreamNoInit, init, initBanned, initDownstream, initUpstream, setBanned, setPathSign
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getKey
protected EventWrapper(GraphL3 graph)
graph
- Owner graphpublic boolean isBreadthNode()
public int getSign()
public boolean isUbique()
public abstract boolean isTranscription()
isTranscription
in interface Node
isTranscription
in class AbstractNode
protected void addToUpstream(BioPAXElement ele, Graph graph)
ele
- Element to bindgraph
- Owner graph.protected void addToDownstream(PhysicalEntity pe, Graph graph)
pe
- PhysicalEntity to bindgraph
- Owner graph.public Collection<Node> getUpperEquivalent()
getUpperEquivalent
in interface Node
getUpperEquivalent
in class AbstractNode
public Collection<Node> getLowerEquivalent()
getLowerEquivalent
in interface Node
getLowerEquivalent
in class AbstractNode
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