001package org.biopax.paxtools.pattern.miner;
002
003import org.biopax.paxtools.pattern.Pattern;
004import org.biopax.paxtools.pattern.PatternBox;
005
006/**
007 * Miner for the degradation pattern.
008 * @author Ozgun Babur
009 */
010public class CSCOThroughDegradationMiner extends AbstractSIFMiner
011{
012        /**
013         * Constructor that sets name and description.
014         */
015        public CSCOThroughDegradationMiner()
016        {
017                super(SIFEnum.CONTROLS_STATE_CHANGE_OF);
018        }
019
020        /**
021         * Constructs the pattern.
022         * @return pattern
023         */
024        @Override
025        public Pattern constructPattern()
026        {
027                return PatternBox.controlsStateChangeThroughDegradation();
028        }
029
030        @Override
031        public String getSourceLabel()
032        {
033                return "upstream ER";
034        }
035
036        @Override
037        public String getTargetLabel()
038        {
039                return "downstream ER";
040        }
041
042        @Override
043        public String[] getMediatorLabels()
044        {
045                return new String[]{"Control", "Conversion"};
046        }
047
048        @Override
049        public String[] getSourcePELabels()
050        {
051                return new String[]{"upstream SPE", "upstream PE"};
052        }
053
054        @Override
055        public String[] getTargetPELabels()
056        {
057                return new String[]{"input PE", "input SPE"};
058        }
059}