Package | Description |
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org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
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org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
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Modifier and Type | Class and Description |
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class |
StoichiometryImpl |
Modifier and Type | Method and Description |
---|---|
Set<Stoichiometry> |
ComplexImpl.getComponentStoichiometry() |
Class<? extends Stoichiometry> |
StoichiometryImpl.getModelInterface() |
Set<Stoichiometry> |
ConversionImpl.getParticipantStoichiometry() |
Modifier and Type | Method and Description |
---|---|
void |
ComplexImpl.addComponentStoichiometry(Stoichiometry stoichiometry) |
void |
ConversionImpl.addParticipantStoichiometry(Stoichiometry participantStoichiometry) |
void |
ComplexImpl.removeComponentStoichiometry(Stoichiometry stoichiometry) |
void |
ConversionImpl.removeParticipantStoichiometry(Stoichiometry participantStoichiometry) |
Modifier and Type | Method and Description |
---|---|
protected void |
ComplexImpl.setComponentStoichiometry(Set<Stoichiometry> stoichiometry) |
protected void |
ConversionImpl.setParticipantStoichiometry(Set<Stoichiometry> participantStoichiometry) |
Modifier and Type | Method and Description |
---|---|
Set<Stoichiometry> |
Complex.getComponentStoichiometry()
The stoichiometry of components in a complex.
|
Set<Stoichiometry> |
Conversion.getParticipantStoichiometry()
Stoichiometry of the left (
Conversion.getLeft() ) and right(Conversion.getRight() ) participants. |
Modifier and Type | Method and Description |
---|---|
void |
Complex.addComponentStoichiometry(Stoichiometry stoichiometry)
The stoichiometry of components in a complex.
|
void |
Conversion.addParticipantStoichiometry(Stoichiometry stoichiometry)
This method adds a stoichiometry for one of the participants of this conversion.
|
void |
Complex.removeComponentStoichiometry(Stoichiometry stoichiometry)
The stoichiometry of components in a complex.
|
void |
Conversion.removeParticipantStoichiometry(Stoichiometry stoichiometry)
This method removes a stoichiometry for one of the participants of this conversion.
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