Package | Description |
---|---|
org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
|
org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
|
Modifier and Type | Class and Description |
---|---|
class |
DnaReferenceImpl |
class |
DnaRegionReferenceImpl |
class |
NucleicAcidReferenceImpl |
class |
NucleicAcidRegionReferenceImpl |
class |
ProteinReferenceImpl |
class |
RnaReferenceImpl |
class |
RnaRegionReferenceImpl |
class |
SequenceEntityReferenceImpl |
Modifier and Type | Interface and Description |
---|---|
interface |
DnaReference
A DNA reference is a grouping of several DNA entities that are common in
sequence and genomic position.
|
interface |
DnaRegionReference
Definition: A DNARegionReference is a grouping of several DNARegion entities that are common in sequence and
genomic position.
|
interface |
NucleicAcidReference
Role interface for NucleicAcidReferences, namely DNA and RNA.
|
interface |
NucleicAcidRegionReference |
interface |
ProteinReference
Description: A protein reference is a grouping of several protein entities that are encoded by the same
genetic sequence.
|
interface |
RnaReference |
interface |
RnaRegionReference
A RNA region reference
|
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