@Entity @Indexed public class CatalysisImpl extends ControlImpl implements Catalysis
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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CatalysisImpl() |
Modifier and Type | Method and Description |
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void |
addCofactor(PhysicalEntity cofactor)
Any cofactor(s) or coenzyme(s) required for catalysis of the conversion by the enzyme.
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void |
addController(Controller controller)
The controlling entity, e.g., in a biochemical reaction, an enzyme is the controlling entity of the reaction.
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protected boolean |
checkControlled(Process controlled) |
CatalysisDirectionType |
getCatalysisDirection()
This property represents the direction of this catalysis under all physiological conditions if there is one.
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Set<PhysicalEntity> |
getCofactor()
Any cofactor(s) or coenzyme(s) required for catalysis of the conversion by the enzyme.
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Class<? extends Catalysis> |
getModelInterface()
This method returns the actual model interface that a class implements.
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void |
removeCofactor(PhysicalEntity cofactor)
Any cofactor(s) or coenzyme(s) required for catalysis of the conversion by the enzyme.
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void |
setCatalysisDirection(CatalysisDirectionType catalysisDirection)
This property represents the direction of this catalysis under all physiological conditions if there is one.
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protected void |
setCofactor(Set<PhysicalEntity> cofactor) |
addControlled, getControlled, getController, getControlType, getPathwayController, getPeController, removeControlled, removeController, setControlled, setControlType, setPathwayController, setPeController
addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipant, setInteractionType, setParticipant
getControlledOf, getPathwayComponentOf, getStepProcessOf, setControlledOf, setPathwayComponentOf, setStepProcessOf
addAvailability, addDataSource, addEvidence, getAvailability, getDataSource, getEvidence, getParticipantOf, removeAvailability, removeDataSource, removeEvidence, semanticallyEquivalent, setAvailability, setDataSource, setEvidence, setParticipantOf
addName, getDisplayName, getDisplayNameX, getName, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setStandardName, setStandardNameX
addXref, equivalenceCode, getXref, removeXref, setXref
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, toString
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addControlled, getControlled, getController, getControlType, removeControlled, removeController, setControlType
addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipant
getControlledOf, getPathwayComponentOf, getStepProcessOf
addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource
addEvidence, getEvidence, removeEvidence
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName
addXref, getXref, removeXref
addComment, getComment, removeComment
equivalenceCode, getAnnotations, getRDFId, isEquivalent
public CatalysisImpl()
public Class<? extends Catalysis> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class ControlImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.public CatalysisDirectionType getCatalysisDirection()
Catalysis
getCatalysisDirection
in interface Catalysis
public void setCatalysisDirection(CatalysisDirectionType catalysisDirection)
Catalysis
setCatalysisDirection
in interface Catalysis
catalysisDirection
- direction of this catalysis under all physiological conditions if there is onepublic Set<PhysicalEntity> getCofactor()
Catalysis
getCofactor
in interface Catalysis
protected void setCofactor(Set<PhysicalEntity> cofactor)
public void addCofactor(PhysicalEntity cofactor)
Catalysis
addCofactor
in interface Catalysis
cofactor
- cofactor(s) or coenzyme(s) required for catalysis of the conversionpublic void removeCofactor(PhysicalEntity cofactor)
Catalysis
removeCofactor
in interface Catalysis
cofactor
- cofactor(s) or coenzyme(s) required for catalysis of the conversionpublic void addController(Controller controller)
Control
addController
in interface Control
addController
in class ControlImpl
controller
- The controlling entityprotected boolean checkControlled(Process controlled)
checkControlled
in class ControlImpl
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