Package | Description |
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org.biopax.paxtools.query |
Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other
molecules that is reachable through some specific paths using the BioPAX data model.
|
org.biopax.paxtools.query.algorithm |
This package contains the SIF rules for BioPAX Level 3.
|
Class and Description |
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Direction
Direction is used for specifying upstream, downstream or both.
|
LimitType
Specifies whether the length limit is a normal limit or shortest_plus_k limit.
|
Class and Description |
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BFS
Implements breadth-first search.
|
Direction
Direction is used for specifying upstream, downstream or both.
|
LimitType
Specifies whether the length limit is a normal limit or shortest_plus_k limit.
|
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