Package | Description |
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org.biopax.paxtools.query |
Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other
molecules that is reachable through some specific paths using the BioPAX data model.
|
org.biopax.paxtools.query.algorithm |
This package contains the SIF rules for BioPAX Level 3.
|
Modifier and Type | Method and Description |
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static Set<BioPAXElement> |
QueryExecuter.runPathsFromTo(Set<BioPAXElement> sourceSet,
Set<BioPAXElement> targetSet,
Model model,
LimitType limitType,
int limit,
Filter... filters)
Gets paths the graph composed of the paths from a source node, and ends at a target node.
|
Modifier and Type | Method and Description |
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static LimitType |
LimitType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static LimitType[] |
LimitType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Constructor and Description |
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PathsFromToQuery(Set<Node> sourceSet,
Set<Node> targetSet,
LimitType limitType,
int stopDistance,
boolean strict)
Constructor with parameters.
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Copyright © 2015 BioPAX. All rights reserved.