Package | Description |
---|---|
org.biopax.paxtools.pattern |
Main package.
|
org.biopax.paxtools.pattern.constraint |
Package for constraints.
|
org.biopax.paxtools.pattern.example | |
org.biopax.paxtools.pattern.miner |
Package for pattern miner utility.
|
org.biopax.paxtools.pattern.util |
Package for several utility classes.
|
Class and Description |
---|
Blacklist
A blacklist is used for not using ubiquitous small molecules in patterns.
|
ProgressWatcher
This interface is to use for tracking progress of a process.
|
Class and Description |
---|
Blacklist
A blacklist is used for not using ubiquitous small molecules in patterns.
|
RelType
Distinguishes between input and output.
|
Class and Description |
---|
Blacklist
A blacklist is used for not using ubiquitous small molecules in patterns.
|
Class and Description |
---|
AdjacencyMatrix
Adjacency matrix representation of a graph.
|
Blacklist
A blacklist is used for not using ubiquitous small molecules in patterns.
|
PhysicalEntityChain
This class takes two PhysicalEntity objects linked with generic or complex member relationships,
and prepares an array of PEs that link those.
|
Class and Description |
---|
PhysicalEntityChain
This class takes two PhysicalEntity objects linked with generic or complex member relationships,
and prepares an array of PEs that link those.
|
PhysicalEntityChain.Activity
Values for activity.
|
RelType
Distinguishes between input and output.
|
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