public class ParticipatingPE extends ConstraintAdapter
Participant
blacklist, size
Constructor and Description |
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ParticipatingPE(RelType type)
Deprecated.
Constructor with parameters.
|
ParticipatingPE(RelType type,
Blacklist blacklist)
Deprecated.
Constructor with parameters.
|
Modifier and Type | Method and Description |
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boolean |
canGenerate()
Deprecated.
This is a generative constraint.
|
Collection<BioPAXElement> |
generate(Match match,
int... ind)
Deprecated.
First evaluates the direction that the Control is affecting the Conversion, then gets the
related participants.
|
assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, satisfies, setSize
public ParticipatingPE(RelType type, Blacklist blacklist)
type
- direction from the Conversion - input or output typeblacklist
- a skip-list of ubiquitous moleculespublic ParticipatingPE(RelType type)
type
- direction from the Conversionpublic boolean canGenerate()
canGenerate
in interface Constraint
canGenerate
in class ConstraintAdapter
public Collection<BioPAXElement> generate(Match match, int... ind)
generate
in interface Constraint
generate
in class ConstraintAdapter
match
- current pattern matchind
- mapped indicesCopyright © 2015 BioPAX. All rights reserved.