public class Participant extends ConstraintAdapter
blacklist, size
Constructor and Description |
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Participant(RelType type)
Constructor with parameters.
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Participant(RelType type,
Blacklist blacklist)
Constructor with parameters.
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Participant(RelType type,
Blacklist blacklist,
boolean considerControl)
Constructor with parameters.
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Participant(RelType type,
Blacklist blacklist,
boolean considerControl,
boolean considerPathway)
Constructor with parameters.
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Participant(RelType type,
boolean considerControl)
Constructor with parameters.
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Participant(RelType type,
boolean considerControl,
boolean considerPathway)
Constructor with parameters.
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Modifier and Type | Method and Description |
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boolean |
canGenerate()
This is a generative constraint.
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Collection<BioPAXElement> |
generate(Match match,
int... ind)
Identifies the conversion direction and gets the related participants.
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assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, satisfies, setSize
public Participant(RelType type, Blacklist blacklist, boolean considerControl, boolean considerPathway)
type
- input or output conversionblacklist
- for detecting ubiquitous small moleculesconsiderControl
- whether there is a Control that we should considerconsiderPathway
- whether there is a Pathway that we should considerpublic Participant(RelType type)
type
- input or output of the conversionpublic Participant(RelType type, Blacklist blacklist)
type
- input or output conversionblacklist
- for detecting ubiquitous small moleculespublic Participant(RelType type, Blacklist blacklist, boolean considerControl)
type
- input or output conversionblacklist
- for detecting ubiquitous small moleculesconsiderControl
- whether there is a Control that we should considerpublic Participant(RelType type, boolean considerControl)
type
- input or output of the conversionconsiderControl
- whether there is a Control that we should considerpublic Participant(RelType type, boolean considerControl, boolean considerPathway)
type
- input or output of the conversionconsiderControl
- whether there is a Control that we should considerconsiderPathway
- whether there is a Pathway that we should considerpublic boolean canGenerate()
canGenerate
in interface Constraint
canGenerate
in class ConstraintAdapter
public Collection<BioPAXElement> generate(Match match, int... ind)
generate
in interface Constraint
generate
in class ConstraintAdapter
match
- current pattern matchind
- mapped indicesCopyright © 2015 BioPAX. All rights reserved.