public class PEChainsIntersect extends ConstraintAdapter
blacklist, size
Constructor and Description |
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PEChainsIntersect(boolean intersectionDesired)
Constructor with the desired result.
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PEChainsIntersect(boolean intersectionDesired,
boolean ignoreEndPoints)
Constructor with the desired result and endpoint ignore option.
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Modifier and Type | Method and Description |
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boolean |
satisfies(Match match,
int... ind)
Creates two PhysicalEntity chains with the given endpoints, and checks if they are
intersecting.
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assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, setSize
public PEChainsIntersect(boolean intersectionDesired)
intersectionDesired
- desired resultpublic PEChainsIntersect(boolean intersectionDesired, boolean ignoreEndPoints)
intersectionDesired
- desired resultignoreEndPoints
- option to ignore intersection at the endpoints of the chainspublic boolean satisfies(Match match, int... ind)
satisfies
in interface Constraint
satisfies
in class ConstraintAdapter
match
- current pattern matchind
- mapped indicesCopyright © 2015 BioPAX. All rights reserved.