Package | Description |
---|---|
org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
|
org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
|
Modifier and Type | Class and Description |
---|---|
class |
CellularLocationVocabularyImpl |
class |
CellVocabularyImpl |
class |
ControlledVocabularyImpl |
class |
EntityReferenceTypeVocabularyImpl |
class |
EvidenceCodeVocabularyImpl |
class |
ExperimentalFormVocabularyImpl |
class |
InteractionVocabularyImpl |
class |
PhenotypeVocabularyImpl |
class |
RelationshipTypeVocabularyImpl |
class |
SequenceModificationVocabularyImpl |
class |
SequenceRegionVocabularyImpl |
class |
TissueVocabularyImpl |
Modifier and Type | Method and Description |
---|---|
Class<? extends ControlledVocabulary> |
ControlledVocabularyImpl.getModelInterface() |
Modifier and Type | Interface and Description |
---|---|
interface |
CellularLocationVocabulary
Definition: A reference to the Gene Ontology Cellular Component (GO CC) ontology.
|
interface |
CellVocabulary
Definition: A reference to the Cell Type Ontology (CL).
|
interface |
EntityReferenceTypeVocabulary
Definiiton: A reference to a term from an entity reference group ontology.
|
interface |
EvidenceCodeVocabulary
Definition: A reference to the PSI Molecular Interaction ontology
experimental method types, including "interaction detection method", "participant identification method",
"feature detection method".
|
interface |
ExperimentalFormVocabulary
Definition: A term that describes the form of the physical entity in the context of the experiment.
|
interface |
InteractionVocabulary
A reference to the PSI Molecular Interaction ontology (MI) interaction type.
|
interface |
PhenotypeVocabulary |
interface |
RelationshipTypeVocabulary
Vocabulary for defining relationship Xref types.
|
interface |
SequenceModificationVocabulary
Definition: A term that describes the covalent modifications to an amino
acid or nucleic acid chain.
|
interface |
SequenceRegionVocabulary
Definition: A reference to a controlled vocabulary of sequence regions, such as InterPro or Sequence Ontology (SO)
Homepage at http://www.sequenceontology.org.
|
interface |
TissueVocabulary
Definition: A reference to the BRENDA
|
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