@Entity @Indexed public class SequenceSiteImpl extends SequenceLocationImpl implements SequenceSite
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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SequenceSiteImpl() |
Modifier and Type | Method and Description |
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int |
equivalenceCode()
If two elements are equivalent, then their equivalence code should be the
same.
|
Class<? extends SequenceSite> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
PositionStatusType |
getPositionStatus() |
int |
getSequencePosition() |
protected boolean |
semanticallyEquivalent(BioPAXElement element) |
void |
setPositionStatus(PositionStatusType positionStatus) |
void |
setSequencePosition(int sequencePosition) |
String |
toString() |
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addComment, getComment, removeComment
getAnnotations, getRDFId, isEquivalent
public SequenceSiteImpl()
public Class<? extends SequenceSite> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class SequenceLocationImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.protected boolean semanticallyEquivalent(BioPAXElement element)
semanticallyEquivalent
in class BioPAXElementImpl
public int equivalenceCode()
BioPAXElement
equivalenceCode
in interface BioPAXElement
equivalenceCode
in class BioPAXElementImpl
public String toString()
toString
in class BioPAXElementImpl
public PositionStatusType getPositionStatus()
getPositionStatus
in interface SequenceSite
public void setPositionStatus(PositionStatusType positionStatus)
setPositionStatus
in interface SequenceSite
public int getSequencePosition()
getSequencePosition
in interface SequenceSite
public void setSequencePosition(int sequencePosition)
setSequencePosition
in interface SequenceSite
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