@Entity @Indexed public class SequenceIntervalImpl extends SequenceLocationImpl implements SequenceInterval
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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SequenceIntervalImpl() |
Modifier and Type | Method and Description |
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int |
equivalenceCode()
If two elements are equivalent, then their equivalence code should be the
same.
|
Class<? extends SequenceInterval> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
SequenceSite |
getSequenceIntervalBegin() |
SequenceSite |
getSequenceIntervalEnd() |
protected boolean |
semanticallyEquivalent(BioPAXElement element) |
void |
setSequenceIntervalBegin(SequenceSite sequenceIntervalBegin) |
void |
setSequenceIntervalEnd(SequenceSite sequenceIntervalEnd) |
String |
toString() |
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addComment, getComment, removeComment
getAnnotations, getRDFId, isEquivalent
public SequenceIntervalImpl()
public Class<? extends SequenceInterval> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class SequenceLocationImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.protected boolean semanticallyEquivalent(BioPAXElement element)
semanticallyEquivalent
in class BioPAXElementImpl
public int equivalenceCode()
BioPAXElement
equivalenceCode
in interface BioPAXElement
equivalenceCode
in class BioPAXElementImpl
public SequenceSite getSequenceIntervalBegin()
getSequenceIntervalBegin
in interface SequenceInterval
public void setSequenceIntervalBegin(SequenceSite sequenceIntervalBegin)
setSequenceIntervalBegin
in interface SequenceInterval
public SequenceSite getSequenceIntervalEnd()
getSequenceIntervalEnd
in interface SequenceInterval
public void setSequenceIntervalEnd(SequenceSite sequenceIntervalEnd)
setSequenceIntervalEnd
in interface SequenceInterval
public String toString()
toString
in class BioPAXElementImpl
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