@Entity @Indexed public class ModificationFeatureImpl extends EntityFeatureImpl implements ModificationFeature
FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Constructor and Description |
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ModificationFeatureImpl() |
Modifier and Type | Method and Description |
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int |
equivalenceCode()
If two elements are equivalent, then their equivalence code should be the
same.
|
Class<? extends ModificationFeature> |
getModelInterface()
This method returns the actual model interface that a class implements.
|
SequenceModificationVocabulary |
getModificationType() |
protected boolean |
semanticallyEquivalent(BioPAXElement element) |
void |
setModificationType(SequenceModificationVocabulary featureType) |
String |
toString() |
addEvidence, addMemberFeature, atEquivalentLocation, getEntityFeatureOf, getEvidence, getFeatureLocation, getFeatureLocationType, getFeatureOf, getMemberFeature, getMemberFeatureOf, getNotFeatureOf, locationCode, removeEvidence, removeMemberFeature, setEntityFeatureOf, setEvidence, setFeatureLocation, setFeatureLocationType, setFeatureOf, setMemberFeature, setMemberFeatureOf, setNotFeatureOf
addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment
equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
addMemberFeature, atEquivalentLocation, getEntityFeatureOf, getFeatureLocation, getFeatureLocationType, getFeatureOf, getMemberFeature, getMemberFeatureOf, getNotFeatureOf, removeMemberFeature, setFeatureLocation, setFeatureLocationType
addEvidence, getEvidence, removeEvidence
addComment, getComment, removeComment
getAnnotations, getRDFId, isEquivalent
public ModificationFeatureImpl()
public String toString()
toString
in class BioPAXElementImpl
public Class<? extends ModificationFeature> getModelInterface()
BioPAXElement
getModelInterface
in interface BioPAXElement
getModelInterface
in class EntityFeatureImpl
org.biopax.paxtools.model
package
corresponding to a BioPAX class.public SequenceModificationVocabulary getModificationType()
getModificationType
in interface ModificationFeature
public void setModificationType(SequenceModificationVocabulary featureType)
setModificationType
in interface ModificationFeature
featureType
- Description and classification of the feature.protected boolean semanticallyEquivalent(BioPAXElement element)
semanticallyEquivalent
in class EntityFeatureImpl
public int equivalenceCode()
BioPAXElement
equivalenceCode
in interface BioPAXElement
equivalenceCode
in class EntityFeatureImpl
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