compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• org.biopax.paxtools:json-converter:jar:4.3.1

  BioPAX to/from JSON Converter
  Description: BioPAX to/from JSON Converters URL: http://biopax.github.io/Paxtools Project License: LGPL 2.0 license

  • org.apache.jena:apache-jena-libs:pom:2.11.2 (compile)

    Apache Jena - Libraries POM
    Description: A convenience POM artifact that may be referenced to pull in all the standard Jena Libraries (Core, ARQ, IRI, and TDB) with a single dependency. URL: http://jena.apache.org/apache-jena-libs/ Project License: The Apache Software License, Version 2.0

    • org.apache.jena:jena-tdb:jar:1.0.2 (compile)

      Apache Jena - TDB (Native Triple Store)
      Description: TDB is a storage subsystem for Jena and ARQ, it is a native triple store providing persisent disk based storage of triples/quads. URL: http://jena.apache.org/jena-tdb/ Project License: The Apache Software License, Version 2.0

      • org.apache.jena:jena-arq:jar:2.11.2 (compile)

        Apache Jena - ARQ (SPARQL 1.1 Query Engine)
        Description: ARQ is a SPARQL 1.1 query engine for Apache Jena URL: http://jena.apache.org/jena-arq/ Project License: The Apache Software License, Version 2.0

        • org.apache.httpcomponents:httpclient:jar:4.2.6 (compile)

          Apache HttpClient
          Description: HttpComponents Client URL: http://hc.apache.org/httpcomponents-client Project License: Apache License

          • org.apache.httpcomponents:httpcore:jar:4.2.5 (compile)

            Apache HttpCore
            Description: HttpComponents Core (blocking I/O) URL: http://hc.apache.org/httpcomponents-core-ga Project License: Apache License

          • commons-codec:commons-codec:jar:1.6 (compile)

            Commons Codec
            Description: The codec package contains simple encoder and decoders for various formats such as Base64 and Hexadecimal. In addition to these widely used encoders and decoders, the codec package also maintains a collection of phonetic encoding utilities. URL: http://commons.apache.org/codec/ Project License: The Apache Software License, Version 2.0

        • com.github.jsonld-java:jsonld-java:jar:0.4 (compile)

          JSONLD Java :: Core
          Description: Json-LD core implementation URL: http://github.com/jsonld-java/jsonld-java/jsonld-java/ Project License: Revised BSD License

          • com.fasterxml.jackson.core:jackson-core:jar:2.3.3 (compile)

            Jackson-core
            Description: Core Jackson abstractions, basic JSON streaming API implementation URL: http://wiki.fasterxml.com/JacksonHome Project License: The Apache Software License, Version 2.0, GNU Lesser General Public License, Version 2.1

          • com.fasterxml.jackson.core:jackson-databind:jar:2.3.3 (compile)

            jackson-databind
            Description: General data-binding functionality for Jackson: works on core streaming API URL: http://wiki.fasterxml.com/JacksonHome Project License: The Apache Software License, Version 2.0, GNU Lesser General Public License, Version 2.1

            • com.fasterxml.jackson.core:jackson-annotations:jar:2.3.0 (compile)

              Jackson-annotations
              Description: Core annotations used for value types, used by Jackson data binding package. URL: http://wiki.fasterxml.com/JacksonHome Project License: The Apache Software License, Version 2.0, GNU Lesser General Public License, Version 2.1

        • org.apache.httpcomponents:httpclient-cache:jar:4.2.6 (compile)

          Apache HttpClient Cache
          Description: HttpComponents HttpClient - Cache URL: http://hc.apache.org/httpcomponents-client Project License: Apache License

        • org.slf4j:jcl-over-slf4j:jar:1.7.6 (compile)

          JCL 1.1.1 implemented over SLF4J
          Description: JCL 1.1.1 implemented over SLF4J URL: http://www.slf4j.org Project License: MIT License

      • org.apache.jena:jena-core:jar:2.11.2 (compile)

        Apache Jena - Core
        Description: Jena is a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, SPARQL and includes a rule-based inference engine. URL: http://jena.apache.org/jena-core/ Project License: The Apache Software License, Version 2.0

        • org.apache.jena:jena-iri:jar:1.0.2 (compile)

          Apache Jena - IRI
          Description: The IRI module provides an implementation of the IRI and URI specifications (RFC 3987 and 3986) which are used across Jena in order to comply with relevant W3C specifications for RDF and SPARQL which require conformance to these specifications. URL: http://jena.apache.org/jena-iri/ Project License: The Apache Software License, Version 2.0

        • xerces:xercesImpl:jar:2.11.0 (compile)

          Xerces2-j

          Description: Xerces2 is the next generation of high performance, fully compliant XML parsers in the Apache Xerces family. This new version of Xerces introduces the Xerces Native Interface (XNI), a complete framework for building parser components and configurations that is extremely modular and easy to program. The Apache Xerces2 parser is the reference implementation of XNI but other parser components, configurations, and parsers can be written using the Xerces Native Interface. For complete design and implementation documents, refer to the XNI Manual. Xerces2 is a fully conforming XML Schema 1.0 processor. A partial experimental implementation of the XML Schema 1.1 Structures and Datatypes Working Drafts (December 2009) and an experimental implementation of the XML Schema Definition Language (XSD): Component Designators (SCD) Candidate Recommendation (January 2010) are provided for evaluation. For more information, refer to the XML Schema page. Xerces2 also provides a complete implementation of the Document Object Model Level 3 Core and Load/Save W3C Recommendations and provides a complete implementation of the XML Inclusions (XInclude) W3C Recommendation. It also provides support for OASIS XML Catalogs v1.1. Xerces2 is able to parse documents written according to the XML 1.1 Recommendation, except that it does not yet provide an option to enable normalization checking as described in section 2.13 of this specification. It also handles namespaces according to the XML Namespaces 1.1 Recommendation, and will correctly serialize XML 1.1 documents if the DOM level 3 load/save APIs are in use. URL: https://xerces.apache.org/xerces2-j/ Project License: The Apache Software License, Version 2.0

          • xml-apis:xml-apis:jar:1.4.01 (compile)

            XML Commons External Components XML APIs

            Description: xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun. URL: http://xml.apache.org/commons/components/external/ Project License: The Apache Software License, Version 2.0, The SAX License, The W3C License

    • org.slf4j:slf4j-api:jar:1.7.6 (compile)

      SLF4J API Module
      Description: The slf4j API URL: http://www.slf4j.org Project License: MIT License

    • org.slf4j:slf4j-log4j12:jar:1.7.6 (compile)

      SLF4J LOG4J-12 Binding
      Description: SLF4J LOG4J-12 Binding URL: http://www.slf4j.org Project License: MIT License

  • org.biopax.paxtools:paxtools-core:jar:4.3.1 (compile)

    Paxtools Core (BioPAX object model, I/O API, implementation and extras)
    Description: Paxtools core library includes the BioPAX object model and interfaces, the default implementation and extras: reflection-based class factories and property editors/accessors, some inverse properties (e.g., xrefOf, componentOf), traversal and file (I/O) utilities. URL: http://biopax.github.io/Paxtools Project License: LGPL 2.0 license

    • net.sourceforge.collections:collections-generic:jar:4.01 (compile)

      larvalabs collections
      Description: There is currently no description associated with this project. URL: http://collections.sourceforge.net Project License: Apache License V2.0

    • commons-lang:commons-lang:jar:2.6 (compile)

      Commons Lang
      Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

  • commons-logging:commons-logging:jar:1.1.1 (compile)

    Commons Logging
    Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/logging Project License: The Apache Software License, Version 2.0

  • log4j:log4j:jar:1.2.13 (runtime)

    Log4j
    Description: Log4j URL: http://logging.apache.org/log4j/docs/ Project License: No license is defined for this project.

  • junit:junit:jar:4.10 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    • org.hamcrest:hamcrest-core:jar:1.1 (test)

      Hamcrest Core
      Description: There is currently no description associated with this project. Project License: BSD style