Package | Description |
---|---|
org.biopax.paxtools.query |
Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other
molecules that is reachable through some specific paths using the BioPAX data model.
|
org.biopax.paxtools.query.algorithm |
This package contains the SIF rules for BioPAX Level 3.
|
org.biopax.paxtools.query.model |
This package contains the SIF rules for BioPAX Level 3.
|
org.biopax.paxtools.query.wrapperL3 |
This package contains TODO annotate!
|
org.biopax.paxtools.query.wrapperL3undirected |
This package contains TODO annotate!
|
Class and Description |
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Graph
This graph interface is used in graph algorithms.
|
Node
Node interface to use in graph algorithms.
|
Class and Description |
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Edge
Wrapper interface for edges in a graph to be queried.
|
GraphObject
A graph object is the common interface for nodes and edges in a graph.
|
Node
Node interface to use in graph algorithms.
|
Class and Description |
---|
Edge
Wrapper interface for edges in a graph to be queried.
|
Graph
This graph interface is used in graph algorithms.
|
GraphObject
A graph object is the common interface for nodes and edges in a graph.
|
Node
Node interface to use in graph algorithms.
|
Class and Description |
---|
AbstractEdge
The base class for an edge in the traversed graph.
|
AbstractGraph
Adapter class for a graph that is queried.
|
AbstractNode |
Edge
Wrapper interface for edges in a graph to be queried.
|
Graph
This graph interface is used in graph algorithms.
|
GraphObject
A graph object is the common interface for nodes and edges in a graph.
|
Node
Node interface to use in graph algorithms.
|
Class and Description |
---|
AbstractGraph
Adapter class for a graph that is queried.
|
AbstractNode |
Graph
This graph interface is used in graph algorithms.
|
GraphObject
A graph object is the common interface for nodes and edges in a graph.
|
Node
Node interface to use in graph algorithms.
|
Copyright © 2015 BioPAX. All rights reserved.