Package | Description |
---|---|
org.biopax.paxtools.model.level2 |
This package contains the interfaces that maps to the BioPAX level 2 specification.
|
Modifier and Type | Interface and Description |
---|---|
interface |
biochemicalReaction
A conversion interaction in which one or more entities (substrates) undergo
ovalent changes to become one or more other entities (products).
|
interface |
catalysis
A control interaction in which a physical entity (a catalyst) increases the
rate of a conversion interaction by lowering its activation energy.
|
interface |
complexAssembly
A conversion interaction in which a set of physical entities, at least one
being a macromolecule (e.g.
|
interface |
control |
interface |
conversion |
interface |
interaction |
interface |
modulation
get controlled should be catalysis
|
interface |
pathway |
interface |
physicalInteraction |
interface |
transport |
interface |
transportWithBiochemicalReaction |
Modifier and Type | Method and Description |
---|---|
Set<process> |
control.getCONTROLLED() |
Set<process> |
pathwayStep.getSTEP_INTERACTIONS() |
Modifier and Type | Method and Description |
---|---|
void |
control.addCONTROLLED(process CONTROLLED) |
void |
pathwayStep.addSTEP_INTERACTIONS(process processStep) |
void |
control.removeCONTROLLED(process CONTROLLED) |
void |
pathwayStep.removeSTEP_INTERACTIONS(process processStep) |
Modifier and Type | Method and Description |
---|---|
void |
control.setCONTROLLED(Set<process> CONTROLLED) |
void |
pathwayStep.setSTEP_INTERACTIONS(Set<process> STEP_INTERACTIONS) |
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