Package | Description |
---|---|
org.biopax.paxtools.model.level2 |
This package contains the interfaces that maps to the BioPAX level 2 specification.
|
Modifier and Type | Interface and Description |
---|---|
interface |
biochemicalReaction
A conversion interaction in which one or more entities (substrates) undergo
ovalent changes to become one or more other entities (products).
|
interface |
catalysis
A control interaction in which a physical entity (a catalyst) increases the
rate of a conversion interaction by lowering its activation energy.
|
interface |
complexAssembly
A conversion interaction in which a set of physical entities, at least one
being a macromolecule (e.g.
|
interface |
control |
interface |
conversion |
interface |
interaction |
interface |
modulation
get controlled should be catalysis
|
interface |
pathway |
interface |
pathwayStep
This represents a set of pathway events.
|
interface |
physicalInteraction |
interface |
process
Tagging interface for entities that needs evidence and can be targeted by a
control : Pathway and Interaction
|
interface |
transport |
interface |
transportWithBiochemicalReaction |
Modifier and Type | Method and Description |
---|---|
Set<pathwayComponent> |
pathway.getPATHWAY_COMPONENTS() |
Modifier and Type | Method and Description |
---|---|
void |
pathway.addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT) |
void |
pathway.removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT) |
Modifier and Type | Method and Description |
---|---|
void |
pathway.setPATHWAY_COMPONENTS(Set<pathwayComponent> PATHWAY_COMPONENTS) |
Copyright © 2015 BioPAX. All rights reserved.