Package | Description |
---|---|
org.biopax.paxtools.model.level2 |
This package contains the interfaces that maps to the BioPAX level 2 specification.
|
Modifier and Type | Interface and Description |
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interface |
biochemicalReaction
A conversion interaction in which one or more entities (substrates) undergo
ovalent changes to become one or more other entities (products).
|
interface |
catalysis
A control interaction in which a physical entity (a catalyst) increases the
rate of a conversion interaction by lowering its activation energy.
|
interface |
complexAssembly
A conversion interaction in which a set of physical entities, at least one
being a macromolecule (e.g.
|
interface |
control |
interface |
conversion |
interface |
modulation
get controlled should be catalysis
|
interface |
physicalInteraction |
interface |
transport |
interface |
transportWithBiochemicalReaction |
Modifier and Type | Method and Description |
---|---|
<T extends interaction> |
physicalEntity.getAllInteractions(Class<T> ofType) |
Modifier and Type | Method and Description |
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Set<interaction> |
physicalEntity.getAllInteractions() |
Set<interaction> |
InteractionParticipant.isPARTICIPANTSof()
This method returns the interaction that this entity/pep takes part in.
|
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