Package | Description |
---|---|
org.biopax.paxtools.controller |
This package contains various methods and algorithms for traversing and manipulating the model.
|
org.biopax.paxtools.model.level2 |
This package contains the interfaces that maps to the BioPAX level 2 specification.
|
Modifier and Type | Method and Description |
---|---|
conversion |
ConversionScore.getConversion1() |
conversion |
ConversionScore.getConversion2() |
Constructor and Description |
---|
ConversionScore(conversion conv1,
conversion conv2,
Double score,
Map<physicalEntityParticipant,physicalEntityParticipant> pepMap,
boolean reverseMatch) |
Modifier and Type | Interface and Description |
---|---|
interface |
biochemicalReaction
A conversion interaction in which one or more entities (substrates) undergo
ovalent changes to become one or more other entities (products).
|
interface |
complexAssembly
A conversion interaction in which a set of physical entities, at least one
being a macromolecule (e.g.
|
interface |
transport |
interface |
transportWithBiochemicalReaction |
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