Package org.biopax.paxtools.io.sif.level2

Interface Summary

Interface	Description
InteractionRuleL2	This interface defines a rule which can be run on BioPAX model L2 to derive simple interactions.

Class Summary

Class	Description
AffectsRule	This is an experimental rule that mines ACTIVATES and INHIBITS relations between molecules.
ComponentRule	Component.InSame: A and B are components of same flattened complex structure, A and B are simple.
ConsecutiveCatalysisRule	This class creates an interaction between two entities if they are catalyzing consecutive conversions.
ControlRule	A controls a conversion which B is at left or right or both.
ControlsTogetherRule	Implements Co-Control rule, which means A and B have a control over the same interaction.
InteractionRuleL2Adaptor	Base class for level 2 rules.
ParticipatesRule	Finds pairs of molecules that are participants of the same interaction.