org.biopax.paxtools.io.sbgn.idmapping

Class HGNC

java.lang.Object

org.biopax.paxtools.io.sbgn.idmapping.HGNC

public class HGNC
extends Object

This class provides a mapping between HGNC IDs and approved gene symbols.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
HGNC()

Method Summary

Modifier and Type	Method and Description
static boolean	containsID(String id)
static boolean	containsSymbol(String symbol)
static String	getID(String symbol) Provides HGNC ID of the given approved gene symbol.
static String	getSymbol(String hgncID)
static Set<String>	getSymbols()
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HGNC

public HGNC()

Method Detail

main

public static void main(String[] args)

getID

public static String getID(String symbol)

Provides HGNC ID of the given approved gene symbol.

Parameters:

symbol - HGNC Symbol (aka gene name/symbol)

Returns:

HGNC ID

getSymbol

public static String getSymbol(String hgncID)

containsID

public static boolean containsID(String id)

containsSymbol

public static boolean containsSymbol(String symbol)

getSymbols

public static Set<String> getSymbols()