org.biopax.paxtools.io.jena

Class JenaEditorMap

java.lang.Object

org.biopax.paxtools.controller.EditorMapImpl

org.biopax.paxtools.io.jena.JenaEditorMap

All Implemented Interfaces:

EditorMap

public final class JenaEditorMap
extends EditorMapImpl

This class is an editor map that uses Jena to read BioPAX OWL definition and creates property editors for BioPAX interfaces. This editor map is extensively used for I/O, modification, and querying operations applied on the model.

Field Summary

Fields inherited from class org.biopax.paxtools.controller.EditorMapImpl

classToEditorMap, classToEditorSet, classToInverseEditorMap, level, propertyToEditorMap

Constructor Summary

Constructors

Constructor and Description
JenaEditorMap(BioPAXLevel level)

Method Summary

Modifier and Type	Method and Description
protected void	checkOntologyClassAndRegister(com.hp.hpl.jena.ontology.OntClass ontClass)
protected void	createAndRegisterBeanEditor(com.hp.hpl.jena.ontology.OntProperty property, com.hp.hpl.jena.ontology.OntResource domain)
protected Class<? extends BioPAXElement>	extractClass(com.hp.hpl.jena.rdf.model.Resource resource)
com.hp.hpl.jena.datatypes.xsd.XSDDatatype	getDataTypeFor(PropertyEditor editor)
BioPAXLevel	getLevel() Returns the BioPAX level for which editor map is created.
protected void	init()

Methods inherited from class org.biopax.paxtools.controller.EditorMapImpl

createAndRegisterBeanEditor, getEditorForProperty, getEditorsForProperty, getEditorsOf, getEditorsOf, getInverseEditorsOf, getInverseEditorsOf, getKnownSubClassesOf, getSubclassEditorsForProperty, isInBioPAXNameSpace, iterator, registerEditorsWithSubClasses, registerModelClass

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JenaEditorMap

public JenaEditorMap(BioPAXLevel level)

Method Detail

init

protected void init()

checkOntologyClassAndRegister

protected void checkOntologyClassAndRegister(com.hp.hpl.jena.ontology.OntClass ontClass)

createAndRegisterBeanEditor

protected void createAndRegisterBeanEditor(com.hp.hpl.jena.ontology.OntProperty property,
                                           com.hp.hpl.jena.ontology.OntResource domain)

extractClass

protected Class<? extends BioPAXElement> extractClass(com.hp.hpl.jena.rdf.model.Resource resource)

getDataTypeFor

public com.hp.hpl.jena.datatypes.xsd.XSDDatatype getDataTypeFor(PropertyEditor editor)

getLevel

public BioPAXLevel getLevel()

Description copied from interface: EditorMap

Returns the BioPAX level for which editor map is created. Different BioPAX levels have different editor maps.

Specified by:

getLevel in interface EditorMap

Overrides:

getLevel in class EditorMapImpl

Returns:

BioPAX Level