org.biopax.paxtools.controller

Class ObjectPropertyEditor<D extends BioPAXElement,R extends BioPAXElement>

java.lang.Object

org.biopax.paxtools.controller.PropertyAccessorAdapter<D,R>

org.biopax.paxtools.controller.SimplePropertyAccessor<D,R>

org.biopax.paxtools.controller.AbstractPropertyEditor<D,R>

org.biopax.paxtools.controller.ObjectPropertyEditor<D,R>

All Implemented Interfaces:

PropertyAccessor<D,R>, PropertyEditor<D,R>

public class ObjectPropertyEditor<D extends BioPAXElement,R extends BioPAXElement>
extends AbstractPropertyEditor<D,R>

Provides an editor for all object value types, e.g. everything other than Primitive, ENUM, and String.

Field Summary

Fields inherited from class org.biopax.paxtools.controller.AbstractPropertyEditor

addMethod, checkRestrictions, log, property, removeMethod, setMethod

Fields inherited from class org.biopax.paxtools.controller.SimplePropertyAccessor

getMethod

Fields inherited from class org.biopax.paxtools.controller.PropertyAccessorAdapter

domain, multipleCardinality, range

Constructor Summary

Constructors

Constructor and Description
ObjectPropertyEditor(String property, Method getMethod, Class<D> domain, Class<R> range, boolean multipleCardinality) Full constructor.

Method Summary

Modifier and Type	Method and Description
void	addRangeRestriction(Class<? extends BioPAXElement> domain, Set<Class<? extends BioPAXElement>> ranges) This method adds a range restriction to the property editor.
protected void	checkRestrictions(R value, D bean) Checks if the bean and the value are consistent with the cardinality rules of the model.
protected Method	findInverseGetMethod()
PropertyAccessor<R,? super D>	getInverseAccessor()
Method	getInverseGetMethod()
Map<Class<? extends BioPAXElement>,Set<Class<? extends BioPAXElement>>>	getRestrictedRanges()
Set<Class<? extends BioPAXElement>>	getRestrictedRangesFor(Class<? extends D> restrictedDomain)
boolean	hasInverseLink()
boolean	isCompleteBackward()
boolean	isCompleteForward()
boolean	isInverseMultipleCardinality()
void	setRangeRestriction(Map<Class<? extends BioPAXElement>,Set<Class<? extends BioPAXElement>>> restrictedRanges) This method sets all range restrictions.
String	toString()

Methods inherited from class org.biopax.paxtools.controller.AbstractPropertyEditor

addMaxCardinalityRestriction, createPropertyEditor, detectRange, getAddMethod, getGetMethod, getMaxCardinality, getPrimarySetMethod, getProperty, getRemoveMethod, getSetMethod, getUnknown, invokeMethod, isInstanceOfAtLeastOne, parseValueFromString, removeValueFromBean, removeValueFromBean, setValueToBean, setValueToBean

Methods inherited from class org.biopax.paxtools.controller.SimplePropertyAccessor

getValueFromBean, isMultipleCardinality, isUnknown

Methods inherited from class org.biopax.paxtools.controller.PropertyAccessorAdapter

getDomain, getRange, getValueFromBeans, isMultipleCardinality

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.controller.PropertyAccessor

getDomain, getRange, getValueFromBean, getValueFromBeans, isMultipleCardinality, isUnknown

Constructor Detail

ObjectPropertyEditor

public ObjectPropertyEditor(String property,
                            Method getMethod,
                            Class<D> domain,
                            Class<R> range,
                            boolean multipleCardinality)

Full constructor.

Parameters:

property - Name of the property, e.g. entityReference.

getMethod - A "Method" class that represents the getter method. e.g. getEntityReference()

domain - name of the domain of this property. e.g. PhysicalEntity

range - name of the range of this property. e.g. EntityReference.

multipleCardinality - false if this property is functional, e.g. many-to-one or one-to-one.

Method Detail

getRestrictedRanges

public Map<Class<? extends BioPAXElement>,Set<Class<? extends BioPAXElement>>> getRestrictedRanges()

isCompleteForward

public boolean isCompleteForward()

isCompleteBackward

public boolean isCompleteBackward()

isInverseMultipleCardinality

public boolean isInverseMultipleCardinality()

getInverseGetMethod

public Method getInverseGetMethod()

getInverseAccessor

public PropertyAccessor<R,? super D> getInverseAccessor()

toString

public String toString()

Specified by:

toString in interface PropertyEditor<D extends BioPAXElement,R extends BioPAXElement>

Overrides:

toString in class AbstractPropertyEditor<D extends BioPAXElement,R extends BioPAXElement>

addRangeRestriction

public void addRangeRestriction(Class<? extends BioPAXElement> domain,
                                Set<Class<? extends BioPAXElement>> ranges)

This method adds a range restriction to the property editor. e.g. All entityReferences of Proteins should be ProteinReferences. Note: All restrictions specified in the BioPAX specification is automatically created by the EditorMap during initialization. Use this method if you need to add restrictions that are not specified in the model.

Parameters:

domain - subdomain of the property to be restricted

ranges - valid ranges for this subdomain.

setRangeRestriction

public void setRangeRestriction(Map<Class<? extends BioPAXElement>,Set<Class<? extends BioPAXElement>>> restrictedRanges)

This method sets all range restrictions. Note: All restrictions specified in the BioPAX specification is automatically created by the EditorMap during initialization. Use this method if you need to add restrictions that are not specified in the model.

Parameters:

restrictedRanges - a set of range restrictions specified as a map.

checkRestrictions

protected void checkRestrictions(R value,
                                 D bean)

Description copied from class: AbstractPropertyEditor

Checks if the bean and the value are consistent with the cardinality rules of the model. This method is important for validations.

Overrides:

checkRestrictions in class AbstractPropertyEditor<D extends BioPAXElement,R extends BioPAXElement>

Parameters:

value - Value that is related to the object

bean - Object that is related to the value

getRestrictedRangesFor

public Set<Class<? extends BioPAXElement>> getRestrictedRangesFor(Class<? extends D> restrictedDomain)

Parameters:

restrictedDomain - a subdomain that is restricted.

Returns:

the range restrictions for the given subdomain for this propertyEditor.

hasInverseLink

public boolean hasInverseLink()

Returns:

true iff this property has a defined inverse link in paxtools.

findInverseGetMethod

protected Method findInverseGetMethod()

Returns:

the inverse get method for this property. If the property for this editor is entityReference this method will return a Method instance that represents .EntityReference#getEntityReferenceOf().