Constant Field Values

Contents

• org.biopax.*

org.biopax.*

org.biopax.paxtools.client.BiopaxValidatorClient

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_VALIDATOR_URL	"http://www.biopax.org/validator/check.html"
public static final String	JVM_PROPERTY_URL	"biopax.validator.url"

org.biopax.paxtools.impl.BioPAXElementImpl

Modifier and Type	Constant Field	Value
public static final String	FIELD_AVAILABILITY	"availability"
public static final String	FIELD_COMMENT	"comment"
public static final String	FIELD_DATASOURCE	"dataSource"
public static final String	FIELD_ECNUMBER	"ecnumber"
public static final String	FIELD_KEYWORD	"keyword"
public static final String	FIELD_NAME	"name"
public static final String	FIELD_ORGANISM	"organism"
public static final String	FIELD_PATHWAY	"pathway"
public static final String	FIELD_SEQUENCE	"sequence"
public static final String	FIELD_TERM	"term"
public static final String	FIELD_XREFDB	"xrefdb"
public static final String	FIELD_XREFID	"xrefid"
public static final String	FILTER_BY_DATASOURCE	"datasource"
public static final String	FILTER_BY_ORGANISM	"organism"

org.biopax.paxtools.io.BioPAXIOHandlerAdapter

Modifier and Type	Constant Field	Value
protected static final String	owl	"owl=http://www.w3.org/2002/07/owl#"
protected static final String	rdf	"http://www.w3.org/1999/02/22-rdf-syntax-ns#"
protected static final String	rdfs	"http://www.w3.org/2000/01/rdf-schema#"
protected static final String	xsd	"http://www.w3.org/2001/XMLSchema#"

org.biopax.paxtools.io.sbgn.L3ToSBGNPDConverter

Modifier and Type	Constant Field	Value
public static final String	IS_UBIQUE	"IS_UBIQUE"

org.biopax.paxtools.io.sif.SimpleInteractionConverter

Modifier and Type	Constant Field	Value
public static final String	REDUCE_COMPLEXES	"REDUCE_COMPLEXES"
public static final String	REDUCE_GENERICS	"REDUCE_GENERICS"

org.biopax.paxtools.model.BioPAXLevel

Modifier and Type	Constant Field	Value
public static final String	BP_PREFIX	"http://www.biopax.org/release/"

org.biopax.paxtools.query.algorithm.BFS

Modifier and Type	Constant Field	Value
public static final boolean	BACKWARD	false
public static final int	BLACK	2
public static final boolean	DOWNWARD	false
public static final boolean	FORWARD	true
public static final int	GRAY	1
public static final boolean	UPWARD	true
public static final int	WHITE	0

org.biopax.paxtools.query.model.Node

Modifier and Type	Constant Field	Value
public static final int	NEGATIVE	-1
public static final int	NEUTRAL	0
public static final int	POSITIVE	1

org.biopax.paxtools.query.wrapperL3.ConversionWrapper

Modifier and Type	Constant Field	Value
public static final boolean	LEFT_TO_RIGHT	true
public static final boolean	RIGHT_TO_LEFT	false

org.biopax.paxtools.search.SearchEngine

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_MAX_HITS_PER_PAGE	100
public static final String	FIELD_DATASOURCE	"datasource"
public static final String	FIELD_KEYWORD	"keyword"
public static final String	FIELD_NAME	"name"
public static final String	FIELD_ORGANISM	"organism"
public static final String	FIELD_PATHWAY	"pathway"
public static final String	FIELD_SIZE	"size"
public static final String	FIELD_TYPE	"type"
public static final String	FIELD_URI	"uri"
public static final String	FIELD_XREFDB	"xrefdb"
public static final String	FIELD_XREFID	"xrefid"