001package org.biopax.paxtools.pattern.miner; 002 003/** 004 * Used for customizing the columns in the SIF text output. 005 * @author Ozgun Babur 006 */ 007public class CustomFormat implements SIFToText 008{ 009 /** 010 * Value generators for custom columns. 011 */ 012 private OutputColumn[] columns; 013 014 public CustomFormat(String... cols) 015 { 016 columns = new OutputColumn[cols.length]; 017 018 for (int i = 0; i < cols.length; i++) 019 { 020 columns[i] = new OutputColumn(cols[i]); 021 } 022 } 023 024 /** 025 * Prepares the line in the output file for the given interaction. 026 * @param inter the interaction 027 * @return output line. 028 */ 029 @Override 030 public String convert(SIFInteraction inter) 031 { 032 String s = inter.toString(); 033 034 for (OutputColumn column : columns) 035 { 036 s += "\t" + column.getColumnValue(inter); 037 } 038 039 return s; 040 } 041}