001package org.biopax.paxtools.pattern.miner; 002 003import org.biopax.paxtools.pattern.Pattern; 004import org.biopax.paxtools.pattern.PatternBox; 005 006/** 007 * Miner for the consumption-controlled-by pattern. 008 * @author Ozgun Babur 009 */ 010public class ConsumptionControlledByMiner extends AbstractSIFMiner 011{ 012 /** 013 * Constructor that sets name and description. 014 */ 015 public ConsumptionControlledByMiner() 016 { 017 super(SIFEnum.CONSUMPTION_CONTROLLED_BY); 018 } 019 020 /** 021 * Constructor for extension purposes. 022 * 023 * @param type SIF type 024 */ 025 protected ConsumptionControlledByMiner(SIFType type) 026 { 027 super(type); 028 } 029 030 /** 031 * Constructs the pattern. 032 * @return pattern 033 */ 034 @Override 035 public Pattern constructPattern() 036 { 037 return PatternBox.controlsMetabolicCatalysis(blacklist, true); 038 } 039 040 @Override 041 public String getSourceLabel() 042 { 043 return "part SMR"; 044 } 045 046 @Override 047 public String getTargetLabel() 048 { 049 return "controller ER"; 050 } 051 052 @Override 053 public String[] getMediatorLabels() 054 { 055 return new String[]{"Control", "Conversion"}; 056 } 057 058 @Override 059 public String[] getSourcePELabels() 060 { 061 return new String[]{"controller simple PE", "controller PE"}; 062 } 063 064 @Override 065 public String[] getTargetPELabels() 066 { 067 return new String[]{"part PE", "part SM"}; 068 } 069}