001package org.biopax.paxtools.pattern.constraint; 002 003import org.biopax.paxtools.model.level3.PhysicalEntity; 004import org.biopax.paxtools.pattern.Match; 005import org.biopax.paxtools.pattern.util.Blacklist; 006 007/** 008 * This is a non-generative constraint that checks if the small molecule is ubiquitous in any 009 * context. 010 * 011 * Var0 - PhysicalEntity 012 * 013 * @author Ozgun Babur 014 */ 015public class NonUbique extends ConstraintAdapter 016{ 017 public NonUbique(Blacklist blacklist) 018 { 019 super(1, blacklist); 020 } 021 022 @Override 023 public boolean satisfies(Match match, int... ind) 024 { 025 PhysicalEntity pe = (PhysicalEntity) match.get(ind[0]); 026 return !blacklist.isUbique(pe); 027 } 028}